; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0003544 (gene) of Snake gourd v1 genome

Gene IDTan0003544
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon gag protein
Genome locationLG08:40429267..40431954
RNA-Seq ExpressionTan0003544
SyntenyTan0003544
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-1946.98Show/hide
Query:  KPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKEGNSVGV-----------YYIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQ
        KP   + + +K+ QP +S+T  +FF R+ L    +E   V              Y   EEVD+  E+KQRTSVFDRIKP TTR SVFQR+SM   +EENQ
Subjt:  KPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKEGNSVGV-----------YYIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQ

Query:  DPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLKA
         P S+ TR S F+RL+ S S+K +PSTS FD LK+T+ Q +  M +LKA
Subjt:  DPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLKA

KAA0051327.1 Retrotransposon gag protein [Cucumis melo var. makuwa]6.5e-2148.25Show/hide
Query:  KPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKE-----------GNSVGVYYIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQ
        KP   + + + + +P + +T  +FF R+ L    KE              VG  Y+ +EEV++  E+KQRTSVFDRIKPSTTR SVFQR+SM   +EENQ
Subjt:  KPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKE-----------GNSVGVYYIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQ

Query:  DPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESM
         PTS+STR S F+RL  STS+K +PSTS+FD LK+T+ Q   M
Subjt:  DPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESM

KAA0062063.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-1947.1Show/hide
Query:  KRNDSRKPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKE-----------GNSVGVYYIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVA
        K+    KP   + +   + QP +S+T  +FF R+ L    KE              V   Y+ +EEVD+  E+KQRT VFDRIKPSTTR SVFQR+SMV 
Subjt:  KRNDSRKPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKE-----------GNSVGVYYIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVA

Query:  TKEENQDPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLKA
         +EENQ P S+ST+ S F+RL+ STS+K +PSTS FD LK  + Q +  M TLKA
Subjt:  TKEENQDPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLKA

TYJ99972.1 hypothetical protein E5676_scaffold360G00130 [Cucumis melo var. makuwa]2.1e-1961.7Show/hide
Query:  YIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQDPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLK
        Y  ++E+D+  E+KQRTSVFDRIKPSTT+ SVFQR+SM   +EENQ PT +STR S F+RL+ ST +K QPSTSVFD LK+T+ Q +  M TLK
Subjt:  YIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQDPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLK

TYK27425.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.7e-1946Show/hide
Query:  RKPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKEGNSVGVYY-----------IEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEEN
        RKP S + + + + QP +S+T  +F  R  L    +E   V   +           + ++EVD   E+K+RTS+FDRIKPSTTR SVFQR+SM   +EEN
Subjt:  RKPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKEGNSVGVYY-----------IEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEEN

Query:  QDPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLKA
        Q PTS STR S F+RL+ STS+K +PSTSVF+ LK+T+ Q +    +LKA
Subjt:  QDPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLKA

TrEMBL top hitse value%identityAlignment
A0A5A7U974 Retrotransposon gag protein6.0e-2046.98Show/hide
Query:  KPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKEGNSVGV-----------YYIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQ
        KP   + + +K+ QP +S+T  +FF R+ L    +E   V              Y   EEVD+  E+KQRTSVFDRIKP TTR SVFQR+SM   +EENQ
Subjt:  KPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKEGNSVGV-----------YYIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQ

Query:  DPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLKA
         P S+ TR S F+RL+ S S+K +PSTS FD LK+T+ Q +  M +LKA
Subjt:  DPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLKA

A0A5A7UA77 Retrotransposon gag protein3.2e-2148.25Show/hide
Query:  KPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKE-----------GNSVGVYYIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQ
        KP   + + + + +P + +T  +FF R+ L    KE              VG  Y+ +EEV++  E+KQRTSVFDRIKPSTTR SVFQR+SM   +EENQ
Subjt:  KPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKE-----------GNSVGVYYIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQ

Query:  DPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESM
         PTS+STR S F+RL  STS+K +PSTS+FD LK+T+ Q   M
Subjt:  DPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESM

A0A5A7V1P3 Ty3-gypsy retrotransposon protein6.0e-2047.1Show/hide
Query:  KRNDSRKPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKE-----------GNSVGVYYIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVA
        K+    KP   + +   + QP +S+T  +FF R+ L    KE              V   Y+ +EEVD+  E+KQRT VFDRIKPSTTR SVFQR+SMV 
Subjt:  KRNDSRKPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKE-----------GNSVGVYYIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVA

Query:  TKEENQDPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLKA
         +EENQ P S+ST+ S F+RL+ STS+K +PSTS FD LK  + Q +  M TLKA
Subjt:  TKEENQDPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLKA

A0A5D3BJM6 Uncharacterized protein1.0e-1961.7Show/hide
Query:  YIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQDPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLK
        Y  ++E+D+  E+KQRTSVFDRIKPSTT+ SVFQR+SM   +EENQ PT +STR S F+RL+ ST +K QPSTSVFD LK+T+ Q +  M TLK
Subjt:  YIEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEENQDPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLK

A0A5D3DVW2 Retrotransposon gag protein1.3e-1946Show/hide
Query:  RKPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKEGNSVGVYY-----------IEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEEN
        RKP S + + + + QP +S+T  +F  R  L    +E   V   +           + ++EVD   E+K+RTS+FDRIKPSTTR SVFQR+SM   +EEN
Subjt:  RKPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKEGNSVGVYY-----------IEAEEVDDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMVATKEEN

Query:  QDPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLKA
        Q PTS STR S F+RL+ STS+K +PSTSVF+ LK+T+ Q +    +LKA
Subjt:  QDPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGCCGAACACCTTCAACAAGCTGCAAAATCCTCAAGACAAGTCTACACTTGGGAACAAGCTGCAGAGCCCTCAAGACAAGTCTACGTTCGAGAACAAGCTGCAAA
GCCCTCGAATCAAATCTACATCCGAGAACAAGCTGTAAAGCCCTCAGACAAATTACAGTTAAGAGAGAGAAAGAATCAGAGGAGAAACATTAGAGATTGGGTTGAGACAA
GTGATGATCGAACTCCTGATGCAATGGCAAGCAACATCATCAAACTACTGGATGAAGCTTCCAAAGGTAAGGTTATCGCCAAAGATAACCCGTTGTTTGATCAATCAACT
CCTGCTCATAATCAACTGGAGGAGACAACAAATCAAGATGTAATGTCAGTCATGATGGTTGATGTGGACCCTGATGAAAGAATGGCGGAGATGGAAAGAAAAATCAATCT
CCTGATGAAGAGGAATGATTCAAGGAAACCTACGTCTGAAAGGAGAAGAAGCAAAAAATATTCTCAACCTGGAAAATCAATGACCTCAAAGAAATTCTTCTATAGAAATG
TCCTTCACATGAAAGAAAAGGAAGGAAACTCTGTTGGTGTTTACTACATTGAAGCAGAAGAAGTTGATGACGTAAAAGAAGTCAAGCAAAGGACTTCTGTTTTCGATCGC
ATCAAGCCTTCAACTACTCGACCTTCAGTCTTCCAAAGGATGAGTATGGTCGCGACGAAAGAAGAAAATCAAGATCCTACTTCTAGCTCCACTCGACCTTCAGTCTTCCA
AAGGTTAAATGCCTCTACTTCAAGGAAATGCCAACCTTCAACATCTGTTTTTGACTGCCTCAAAGTAACAAGTGGTCAAGATGAAAGCATGATGAACACCTTGAAAGCGT
CCAAAGTACCGTCCCTTCACGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGCCGAACACCTTCAACAAGCTGCAAAATCCTCAAGACAAGTCTACACTTGGGAACAAGCTGCAGAGCCCTCAAGACAAGTCTACGTTCGAGAACAAGCTGCAAA
GCCCTCGAATCAAATCTACATCCGAGAACAAGCTGTAAAGCCCTCAGACAAATTACAGTTAAGAGAGAGAAAGAATCAGAGGAGAAACATTAGAGATTGGGTTGAGACAA
GTGATGATCGAACTCCTGATGCAATGGCAAGCAACATCATCAAACTACTGGATGAAGCTTCCAAAGGTAAGGTTATCGCCAAAGATAACCCGTTGTTTGATCAATCAACT
CCTGCTCATAATCAACTGGAGGAGACAACAAATCAAGATGTAATGTCAGTCATGATGGTTGATGTGGACCCTGATGAAAGAATGGCGGAGATGGAAAGAAAAATCAATCT
CCTGATGAAGAGGAATGATTCAAGGAAACCTACGTCTGAAAGGAGAAGAAGCAAAAAATATTCTCAACCTGGAAAATCAATGACCTCAAAGAAATTCTTCTATAGAAATG
TCCTTCACATGAAAGAAAAGGAAGGAAACTCTGTTGGTGTTTACTACATTGAAGCAGAAGAAGTTGATGACGTAAAAGAAGTCAAGCAAAGGACTTCTGTTTTCGATCGC
ATCAAGCCTTCAACTACTCGACCTTCAGTCTTCCAAAGGATGAGTATGGTCGCGACGAAAGAAGAAAATCAAGATCCTACTTCTAGCTCCACTCGACCTTCAGTCTTCCA
AAGGTTAAATGCCTCTACTTCAAGGAAATGCCAACCTTCAACATCTGTTTTTGACTGCCTCAAAGTAACAAGTGGTCAAGATGAAAGCATGATGAACACCTTGAAAGCGT
CCAAAGTACCGTCCCTTCACGTATGA
Protein sequenceShow/hide protein sequence
MQAEHLQQAAKSSRQVYTWEQAAEPSRQVYVREQAAKPSNQIYIREQAVKPSDKLQLRERKNQRRNIRDWVETSDDRTPDAMASNIIKLLDEASKGKVIAKDNPLFDQST
PAHNQLEETTNQDVMSVMMVDVDPDERMAEMERKINLLMKRNDSRKPTSERRRSKKYSQPGKSMTSKKFFYRNVLHMKEKEGNSVGVYYIEAEEVDDVKEVKQRTSVFDR
IKPSTTRPSVFQRMSMVATKEENQDPTSSSTRPSVFQRLNASTSRKCQPSTSVFDCLKVTSGQDESMMNTLKASKVPSLHV