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Tan0003652 (gene) of Snake gourd v1 genome

Gene IDTan0003652
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptiontRNA_int_end_N2 domain-containing protein
Genome locationLG10:66616972..66618409
RNA-Seq ExpressionTan0003652
SyntenyTan0003652
Gene Ontology termsGO:0008033 - tRNA processing (biological process)
GO:0140513 - nuclear protein-containing complex (cellular component)
InterPro domainsIPR024337 - tRNA-splicing endonuclease, subunit Sen54


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596967.1 Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp. sororia]5.8e-5658.82Show/hide
Query:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQD+++EEECLCS G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL
        DN +LSLKDVYKKVAEGK+ CIWEQFEVYRHLKSLG+I           G RNG DISS+SSI ENKG+ +F SEDE+SI EL+D+ QLNEVTPIF V+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL

Query:  THNKFRKSSPGDTNFMVCSTR
         H+KFRKSSPGD NFMVC TR
Subjt:  THNKFRKSSPGDTNFMVCSTR

KAG7028441.1 tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosperma]5.8e-5658.82Show/hide
Query:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQD+++EEECLCS G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL
        DN +LSLKDVYKKVAEGK+ CIWEQFEVYRHLKSLG+I           G RNG DISS+SSI ENKG+ +F SEDE+SI EL+D+ QLNEVTPIF V+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL

Query:  THNKFRKSSPGDTNFMVCSTR
         H+KFRKSSPGD NFMVC TR
Subjt:  THNKFRKSSPGDTNFMVCSTR

XP_022156818.1 uncharacterized protein LOC111023660 [Momordica charantia]4.8e-5860.63Show/hide
Query:  MEPTDWESSS-GASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWESSS GASGDD+IYEQD+ DEEECLC+ G MRKLQFR                                            FL+EVGALHLLD+
Subjt:  MEPTDWESSS-GASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL
        DN +LSLKDVYKKVAEGKNGC+WEQFEVYRHLKSLGFI           GVRNG+DIS +SSI EN+GA + ES+DERSISELL S QL++V PIF VFL
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL

Query:  THNKFRKSSPGDTNFMVCSTR
         H+KFRKSSPGD NFMVC TR
Subjt:  THNKFRKSSPGDTNFMVCSTR

XP_022940787.1 tRNA-splicing endonuclease subunit Sen54 [Cucurbita moschata]1.3e-5558.37Show/hide
Query:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQD+++EEECLCS G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL
        DN +LSLKDVYKKVAEGK+ CIWEQFEVYRHLKSLG+I           G +NG DISS+SSI ENKG+ +F SEDE+SI EL+D+ QLNEVTPIF V+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL

Query:  THNKFRKSSPGDTNFMVCSTR
         H+KFRKSSPGD NFMVC TR
Subjt:  THNKFRKSSPGDTNFMVCSTR

XP_023538818.1 tRNA-splicing endonuclease subunit Sen54-like [Cucurbita pepo subsp. pepo]2.0e-5659.28Show/hide
Query:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQD+++EEECLCS G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL
        DN +LSLKDVYKKVAEGK+ CIWEQFEVYRHLKSLG+I           G RNG DISSRSSI ENKG+ +F SEDE+SI EL+D+ QLNEVTPIF V+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL

Query:  THNKFRKSSPGDTNFMVCSTR
         H+KFRKSSPGD NFMVC TR
Subjt:  THNKFRKSSPGDTNFMVCSTR

TrEMBL top hitse value%identityAlignment
A0A6J1DRN3 uncharacterized protein LOC1110236602.3e-5860.63Show/hide
Query:  MEPTDWESSS-GASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWESSS GASGDD+IYEQD+ DEEECLC+ G MRKLQFR                                            FL+EVGALHLLD+
Subjt:  MEPTDWESSS-GASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL
        DN +LSLKDVYKKVAEGKNGC+WEQFEVYRHLKSLGFI           GVRNG+DIS +SSI EN+GA + ES+DERSISELL S QL++V PIF VFL
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL

Query:  THNKFRKSSPGDTNFMVCSTR
         H+KFRKSSPGD NFMVC TR
Subjt:  THNKFRKSSPGDTNFMVCSTR

A0A6J1FKK4 tRNA-splicing endonuclease subunit Sen546.3e-5658.37Show/hide
Query:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQD+++EEECLCS G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL
        DN +LSLKDVYKKVAEGK+ CIWEQFEVYRHLKSLG+I           G +NG DISS+SSI ENKG+ +F SEDE+SI EL+D+ QLNEVTPIF V+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL

Query:  THNKFRKSSPGDTNFMVCSTR
         H+KFRKSSPGD NFMVC TR
Subjt:  THNKFRKSSPGDTNFMVCSTR

A0A6J1I794 tRNA-splicing endonuclease subunit Sen54 isoform X11.4e-5558.82Show/hide
Query:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQD+++EEECL S G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL
        DN +LSLKDVYKKVAEGK+ CIWEQFEVYRHLKSLG+I           G RNG DISSRSSI ENKG+ +FESEDE+SI ELL++ QLNE+TPIF V+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL

Query:  THNKFRKSSPGDTNFMVCSTR
         H+KFRKSSPGD NFMVC TR
Subjt:  THNKFRKSSPGDTNFMVCSTR

A0A6J1I8D9 tRNA-splicing endonuclease subunit Sen54 isoform X31.4e-5558.82Show/hide
Query:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQD+++EEECL S G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL
        DN +LSLKDVYKKVAEGK+ CIWEQFEVYRHLKSLG+I           G RNG DISSRSSI ENKG+ +FESEDE+SI ELL++ QLNE+TPIF V+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL

Query:  THNKFRKSSPGDTNFMVCSTR
         H+KFRKSSPGD NFMVC TR
Subjt:  THNKFRKSSPGDTNFMVCSTR

A0A6J1ICR8 tRNA-splicing endonuclease subunit Sen54 isoform X21.4e-5558.82Show/hide
Query:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQD+++EEECL S G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL
        DN +LSLKDVYKKVAEGK+ CIWEQFEVYRHLKSLG+I           G RNG DISSRSSI ENKG+ +FESEDE+SI ELL++ QLNE+TPIF V+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFL

Query:  THNKFRKSSPGDTNFMVCSTR
         H+KFRKSSPGD NFMVC TR
Subjt:  THNKFRKSSPGDTNFMVCSTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G02370.1 unknown protein1.5e-2039.84Show/hide
Query:  FLIEVGALHLL-DYDNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFIGVRNGNDISSRSSI-------FENKGAINFESEDERSISELLDSTQLN
        +L E+G L LL D D++ +SLKD+Y ++AEGK GC WE +EVYR+LK LG+I  R+G   +++ ++        E+  A  F  +D  S+++LL    + 
Subjt:  FLIEVGALHLL-DYDNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFIGVRNGNDISSRSSI-------FENKGAINFESEDERSISELLDSTQLN

Query:  EVTPIFHVFLTHNKFRKSSPGDTNFMVC
        +  P+F V+L +++F+KSSPG+ +F+ C
Subjt:  EVTPIFHVFLTHNKFRKSSPGDTNFMVC

AT3G02370.2 unknown protein1.5e-2039.84Show/hide
Query:  FLIEVGALHLL-DYDNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFIGVRNGNDISSRSSI-------FENKGAINFESEDERSISELLDSTQLN
        +L E+G L LL D D++ +SLKD+Y ++AEGK GC WE +EVYR+LK LG+I  R+G   +++ ++        E+  A  F  +D  S+++LL    + 
Subjt:  FLIEVGALHLL-DYDNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFIGVRNGNDISSRSSI-------FENKGAINFESEDERSISELLDSTQLN

Query:  EVTPIFHVFLTHNKFRKSSPGDTNFMVC
        +  P+F V+L +++F+KSSPG+ +F+ C
Subjt:  EVTPIFHVFLTHNKFRKSSPGDTNFMVC

AT3G57360.1 unknown protein2.3e-1829.38Show/hide
Query:  MEPTDWESSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLL-DY
        ME  DWE+SS +  +         D++E   S G + KLQFR                                            +L E+G L +L + 
Subjt:  MEPTDWESSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLL-DY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFIGVRNGND----ISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFLTHNKFRK
        D++ + LKD+Y+K+AE K+GC WE +EVYR+LK LG+I  R+G       ++R +  E          D  ++++LL   Q+ +   +F V+L +++F+K
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFIGVRNGND----ISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFLTHNKFRK

Query:  SSPGDTNFMVC
        SSPG+ +F+ C
Subjt:  SSPGDTNFMVC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCTACGGATTGGGAAAGCTCTTCAGGAGCTAGTGGCGATGACGACATTTACGAGCAAGACATGAGAGATGAAGAAGAATGTCTTTGTTCATTTGGGTACATGCG
CAAGTTGCAATTCAGATTTCTTATTGAAGTTGGGGCCTTGCATCTTCTTGATTATGATAATTTAAATCTTTCTTTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAA
ATGGATGTATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTTCATTGGTGTTAGGAATGGAAATGACATTTCTTCTCGAAGTTCTATATTTGAGAAC
AAAGGAGCGATAAATTTTGAATCAGAAGATGAGAGGTCGATCTCTGAGCTATTAGATTCCACTCAACTCAATGAAGTGACACCCATTTTTCATGTTTTTCTTACACATAA
CAAGTTTAGAAAATCTTCTCCTGGTGACACAAATTTTATGGTCTGCTCGACTAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCTACGGATTGGGAAAGCTCTTCAGGAGCTAGTGGCGATGACGACATTTACGAGCAAGACATGAGAGATGAAGAAGAATGTCTTTGTTCATTTGGGTACATGCG
CAAGTTGCAATTCAGATTTCTTATTGAAGTTGGGGCCTTGCATCTTCTTGATTATGATAATTTAAATCTTTCTTTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAA
ATGGATGTATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTTCATTGGTGTTAGGAATGGAAATGACATTTCTTCTCGAAGTTCTATATTTGAGAAC
AAAGGAGCGATAAATTTTGAATCAGAAGATGAGAGGTCGATCTCTGAGCTATTAGATTCCACTCAACTCAATGAAGTGACACCCATTTTTCATGTTTTTCTTACACATAA
CAAGTTTAGAAAATCTTCTCCTGGTGACACAAATTTTATGGTCTGCTCGACTAGGTAA
Protein sequenceShow/hide protein sequence
MEPTDWESSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFRFLIEVGALHLLDYDNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFIGVRNGNDISSRSSIFEN
KGAINFESEDERSISELLDSTQLNEVTPIFHVFLTHNKFRKSSPGDTNFMVCSTR