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Tan0003655 (gene) of Snake gourd v1 genome

Gene IDTan0003655
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionleucine-rich repeat extensin-like protein 1
Genome locationLG01:112044496..112046940
RNA-Seq ExpressionTan0003655
SyntenyTan0003655
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649911.1 hypothetical protein Csa_012510 [Cucumis sativus]3.3e-5169.05Show/hide
Query:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTLDSPPRSYSTYIPPPPPQPDFYGGY-MAPPGPRSSYLFWGPP
        MPF GT R   S GLW+VA  LF A+S  QMAVPSTGQLCISDCSTCPVICTAPPPP          +YIPPPP  P+FYGG+ MAPP   S YL WGPP
Subjt:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTLDSPPRSYSTYIPPPPPQPDFYGGY-MAPPGPRSSYLFWGPP

Query:  PPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSNSY---------PNGKTITGFVYEQGRSSSAFR
        PPV+NY +GA+PSG+MPQT GPRDYSYPYYYFYSSNS          PNGKTITGFV EQGRSSSA R
Subjt:  PPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSNSY---------PNGKTITGFVYEQGRSSSAFR

KAG6608366.1 Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia]6.2e-4269.12Show/hide
Query:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTLDSPPRSYSTYIPPPPPQPDFYGGYMA-PPGPRSSYLFWGPP
        MPF+G    S+SLGLWV+A ALF   SD Q+ VPSTGQLCIS C TCPV+CT P        PRSY+TYIPPPPP   FYGGYM  PP   SSY   GPP
Subjt:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTLDSPPRSYSTYIPPPPPQPDFYGGYMA-PPGPRSSYLFWGPP

Query:  PPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSN
        PPV+NY+ GAQPSGQMPQT GPRDYSYPYYYFYSSN
Subjt:  PPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSN

XP_022940707.1 leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]1.4e-4162.18Show/hide
Query:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTLDSPPRSYSTYIPPPPPQPDFYGGYMA-PPGPRSSYLFWGPP
        MPF+G  R S+SLGLWV+A ALF   SD Q+ VPSTGQLCIS C TCPV+CT P        PRSY+TYIPPPPP   FYGGYM  PP   SSY   GP 
Subjt:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTLDSPPRSYSTYIPPPPPQPDFYGGYMA-PPGPRSSYLFWGPP

Query:  PPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSNSYPNGKTITGFVYEQGRSSS
        PPV+NY+ GAQPSGQMPQT GPRDYSYPYYYFYSSN   +    T  V ++    S
Subjt:  PPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSNSYPNGKTITGFVYEQGRSSS

XP_022981722.1 leucine-rich repeat extensin-like protein 1 [Cucurbita maxima]4.8e-4271.01Show/hide
Query:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAP-PPPTLDSPPRSYSTYIP-PPPPQPDFYGGYMA-PPGPRSSYLFWG
        MPF+G  R S+SLGL V+A ALF   SD Q+ VPST QLCIS C TCPV+CT P P PT    PRSYS+YIP PPPP P FYGGYM  PP   SSY F G
Subjt:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAP-PPPTLDSPPRSYSTYIP-PPPPQPDFYGGYMA-PPGPRSSYLFWG

Query:  PPPPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSN
        PPPPV+NY+ GAQPSGQMPQT GPRDYSYPYYYFYSSN
Subjt:  PPPPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSN

XP_023523402.1 leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo]3.5e-3770.59Show/hide
Query:  VALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTLDSPPRSYSTYIPPPPPQPDFYGGYMA-PPGPRSSYLFWGPPPPVSNYLMGAQPSGQMP
        +A ALF   SD Q+ VPSTGQLCIS C TCPV+CT P        PRSY+TYIPPPPP P FYGGYM  PP   SSY   GPPPPV+NY+ GAQPSGQMP
Subjt:  VALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTLDSPPRSYSTYIPPPPPQPDFYGGYMA-PPGPRSSYLFWGPPPPVSNYLMGAQPSGQMP

Query:  QTAGPRDYSYPYYYFYSSN
        QT GPRDYSYPYYYFYSSN
Subjt:  QTAGPRDYSYPYYYFYSSN

TrEMBL top hitse value%identityAlignment
A0A0A0L054 Microtubule associated protein (Ase1)2.1e-4370.8Show/hide
Query:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTLDSPPRSYSTYIPPPPPQPDFYGGY-MAPPGPRSSYLFWGPP
        MPF GT R   S GLW+VA  LF A+S  QMAVPSTGQLCISDCSTCPVICTAPPPP          +YIPPPP  P+FYGG+ MAPP   S YL WGPP
Subjt:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTLDSPPRSYSTYIPPPPPQPDFYGGY-MAPPGPRSSYLFWGPP

Query:  PPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSNS
        PPV+NY +GA+PSG+MPQT GPRDYSYPYYYFYSSNS
Subjt:  PPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSNS

A0A2N9HA71 Uncharacterized protein4.7e-1943.33Show/hide
Query:  LWVVALALFF-AASDGQMAVPSTGQLCISDCSTCPVICTAPPP---------PTLD--SPPRSYSTYIPPPPPQPDFYGGYMAPPGPRSSYLFWGPPPPV
        +W++ L +     S+ Q+  PS+G LCISDC+TCPVIC+ PPP         P +   SPP+SY    PPPP  P       A P   SSY  WG PPP 
Subjt:  LWVVALALFF-AASDGQMAVPSTGQLCISDCSTCPVICTAPPP---------PTLD--SPPRSYSTYIPPPPPQPDFYGGYMAPPGPRSSYLFWGPPPPV

Query:  SNYLMGAQPSG----QMPQTAGPRDYSYPYYYFYSSNSYPNGKTITGFVY
          Y     PSG    +MP  AGP DY YPYYYFYSS +  +      F Y
Subjt:  SNYLMGAQPSG----QMPQTAGPRDYSYPYYYFYSSNSYPNGKTITGFVY

A0A6A1VUN3 Uncharacterized protein7.7e-2247.62Show/hide
Query:  LGLWVVALALFF--AASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTL--------------DSPPRSYSTYIPPP------PPQPDFYGGYMAPPGPR
        L +W+  L +F     S+ Q+  PSTG LCISDC+TCPVIC+ PPPP L               SPP +YST+ PPP      PP P     Y  PP P+
Subjt:  LGLWVVALALFF--AASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTL--------------DSPPRSYSTYIPPP------PPQPDFYGGYMAPPGPR

Query:  S-SYLFWGPPPPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSNS
        S SY   GPPP    Y     PSGQ P TAGPRDY YPYYYF +S +
Subjt:  S-SYLFWGPPPPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSNS

A0A6J1FKD3 leucine-rich repeat extensin-like protein 26.7e-4262.18Show/hide
Query:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTLDSPPRSYSTYIPPPPPQPDFYGGYMA-PPGPRSSYLFWGPP
        MPF+G  R S+SLGLWV+A ALF   SD Q+ VPSTGQLCIS C TCPV+CT P        PRSY+TYIPPPPP   FYGGYM  PP   SSY   GP 
Subjt:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTLDSPPRSYSTYIPPPPPQPDFYGGYMA-PPGPRSSYLFWGPP

Query:  PPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSNSYPNGKTITGFVYEQGRSSS
        PPV+NY+ GAQPSGQMPQT GPRDYSYPYYYFYSSN   +    T  V ++    S
Subjt:  PPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSNSYPNGKTITGFVYEQGRSSS

A0A6J1IUS7 leucine-rich repeat extensin-like protein 12.3e-4271.01Show/hide
Query:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAP-PPPTLDSPPRSYSTYIP-PPPPQPDFYGGYMA-PPGPRSSYLFWG
        MPF+G  R S+SLGL V+A ALF   SD Q+ VPST QLCIS C TCPV+CT P P PT    PRSYS+YIP PPPP P FYGGYM  PP   SSY F G
Subjt:  MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAP-PPPTLDSPPRSYSTYIP-PPPPQPDFYGGYMA-PPGPRSSYLFWG

Query:  PPPPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSN
        PPPPV+NY+ GAQPSGQMPQT GPRDYSYPYYYFYSSN
Subjt:  PPPPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11990.1 proline-rich family protein2.0e-0632.48Show/hide
Query:  LGLWVVALAL---FFAASDGQMAVPSTGQLCISDCSTCPVICT------------------------APPPPTLDSPPRSYSTYIPPP------PPQPDF
        +GL V+ +AL      AS           LCIS+CSTCP IC+                         PPPP   SPP    +  PPP      PP P F
Subjt:  LGLWVVALAL---FFAASDGQMAVPSTGQLCISDCSTCPVICT------------------------APPPPTLDSPPRSYSTYIPPP------PPQPDF

Query:  YGGYMAPPGPRSSYLFWGPPPPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSNS
        Y     PP P  S    G PP V +      P GQ      P  Y +PY+YFY++++
Subjt:  YGGYMAPPGPRSSYLFWGPPPPVSNYLMGAQPSGQMPQTAGPRDYSYPYYYFYSSNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTTCGAGGAACAACGCGAAATTCTAGCTCTTTGGGGCTTTGGGTTGTGGCATTGGCTCTGTTTTTTGCGGCATCCGACGGCCAGATGGCTGTGCCATCGACTGG
ACAGCTGTGCATCAGCGATTGCTCCACGTGTCCGGTGATCTGTACGGCGCCGCCTCCTCCGACACTCGACTCGCCGCCGCGCTCTTACAGCACTTATATTCCGCCACCGC
CGCCGCAGCCGGACTTTTATGGTGGGTATATGGCGCCGCCGGGTCCACGGTCGTCGTATTTGTTCTGGGGTCCGCCGCCTCCGGTTTCTAATTATTTGATGGGCGCACAA
CCATCTGGTCAGATGCCGCAGACGGCGGGGCCTCGGGATTATTCTTACCCATACTACTATTTTTACAGTTCAAATTCGTATCCAAATGGTAAAACGATAACCGGTTTCGT
TTACGAGCAGGGACGAAGCTCATCGGCTTTCCGGCAGATCTGTGAGTCTACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGTTTCGAGGAACAACGCGAAATTCTAGCTCTTTGGGGCTTTGGGTTGTGGCATTGGCTCTGTTTTTTGCGGCATCCGACGGCCAGATGGCTGTGCCATCGACTGG
ACAGCTGTGCATCAGCGATTGCTCCACGTGTCCGGTGATCTGTACGGCGCCGCCTCCTCCGACACTCGACTCGCCGCCGCGCTCTTACAGCACTTATATTCCGCCACCGC
CGCCGCAGCCGGACTTTTATGGTGGGTATATGGCGCCGCCGGGTCCACGGTCGTCGTATTTGTTCTGGGGTCCGCCGCCTCCGGTTTCTAATTATTTGATGGGCGCACAA
CCATCTGGTCAGATGCCGCAGACGGCGGGGCCTCGGGATTATTCTTACCCATACTACTATTTTTACAGTTCAAATTCGTATCCAAATGGTAAAACGATAACCGGTTTCGT
TTACGAGCAGGGACGAAGCTCATCGGCTTTCCGGCAGATCTGTGAGTCTACGTGA
Protein sequenceShow/hide protein sequence
MPFRGTTRNSSSLGLWVVALALFFAASDGQMAVPSTGQLCISDCSTCPVICTAPPPPTLDSPPRSYSTYIPPPPPQPDFYGGYMAPPGPRSSYLFWGPPPPVSNYLMGAQ
PSGQMPQTAGPRDYSYPYYYFYSSNSYPNGKTITGFVYEQGRSSSAFRQICEST