; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0003673 (gene) of Snake gourd v1 genome

Gene IDTan0003673
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationLG01:108532511..108534336
RNA-Seq ExpressionTan0003673
SyntenyTan0003673
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146043.1 uncharacterized protein At4g28440 [Cucumis sativus]2.4e-7293.51Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT
        MATGKSPTPASQ+LQQ+NAA RPGLRKPVFVK+EQLKPGTNGHTLIV VVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKP TT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIEL +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

XP_008463705.1 PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo]1.1e-7293.51Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT
        MATGKSPTPASQ+LQQ+NAAARPGLRKPVFVK+EQLKPGTNGHTLIV VVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKP TT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

XP_022139613.1 uncharacterized protein At4g28440-like [Momordica charantia]5.4e-7293.51Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT
        MATGKSPTPAS ++QQSNA ARPGLRKPVFVKVEQLKPGTNGHTL V VV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKPETT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

XP_023535412.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]1.1e-6488.31Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT
        MAT KSPTPAS          R GLRKPVFVKVEQLKPGTNGHTLIV VVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKP TT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ EP NFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

XP_038899654.1 uncharacterized protein At4g28440-like [Benincasa hispida]1.3e-7395.45Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT
        MATGKSPTPASQ+LQQSNAAARPGLRKPVFVK+EQLKPGTNGHTLIV VVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKP TT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIEL EP +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

TrEMBL top hitse value%identityAlignment
A0A0A0L242 Uncharacterized protein1.2e-7293.51Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT
        MATGKSPTPASQ+LQQ+NAA RPGLRKPVFVK+EQLKPGTNGHTLIV VVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKP TT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIEL +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

A0A1S3CKC4 uncharacterized protein At4g28440-like5.3e-7393.51Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT
        MATGKSPTPASQ+LQQ+NAAARPGLRKPVFVK+EQLKPGTNGHTLIV VVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKP TT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

A0A5D3DWE0 Nucleic acid-binding5.3e-7393.51Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT
        MATGKSPTPASQ+LQQ+NAAARPGLRKPVFVK+EQLKPGTNGHTLIV VVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKP TT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

A0A6J1CG19 uncharacterized protein At4g28440-like2.6e-7293.51Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT
        MATGKSPTPAS ++QQSNA ARPGLRKPVFVKVEQLKPGTNGHTL V VV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKPETT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

A0A6J1FBC1 uncharacterized protein At4g28440-like6.9e-6587.66Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT
        MAT KSPTPAS          R GLRKPVFVKVEQLKPGTNGHTLIV VVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKP TT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ EP NFVVKEDNNLSL+EYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284401.9e-4368.18Show/hide
Query:  RKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETTIILRNAKIDMFKGSMRLAV
        RKPVFVKVEQLKPGT GHTL V V+ +N V+   R      S+S+  + +RI ECL+GDETG ILFTARNDQVD +KP  T+ILRN++IDMFKG+MRL V
Subjt:  RKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNV
        DKWGRIE T  A+F VKEDNNLSLVEYEL+NV
Subjt:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein5.6e-4363.97Show/hide
Query:  AAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETTIILRNAKIDMFKGSMR
        A A   LRKPVF KV +L+PGTNGH+L V VV++  V+Q+  GR +    RQ RIAECLVGDETG I+FTARNDQVD +K  + + LRNAKIDM+KGSMR
Subjt:  AAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETTIILRNAKIDMFKGSMR

Query:  LAVDKWGRIELT-EPANFVVKEDNNLSLVEYELVNV
        LAVD+WGR+E+  EP +  VK+DNNLSL+EYELV+V
Subjt:  LAVDKWGRIELT-EPANFVVKEDNNLSLVEYELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein5.6e-4363.97Show/hide
Query:  AAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETTIILRNAKIDMFKGSMR
        A A   LRKPVF KV +L+PGTNGH+L V VV++  V+Q+  GR +    RQ RIAECLVGDETG I+FTARNDQVD +K  + + LRNAKIDM+KGSMR
Subjt:  AAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETTIILRNAKIDMFKGSMR

Query:  LAVDKWGRIELT-EPANFVVKEDNNLSLVEYELVNV
        LAVD+WGR+E+  EP +  VK+DNNLSL+EYELV+V
Subjt:  LAVDKWGRIELT-EPANFVVKEDNNLSLVEYELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein7.6e-4866.42Show/hide
Query:  AARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETTIILRNAKIDMFKGSMRLAV
        + + GL+KP F KV+QL+PGT+GH + V +VS+  VLQKGR+     RQ RI+EC+VGDETG I+FTARNDQVD +K  +T+ LRNAKIDM+KGSMRLAV
Subjt:  AARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNVAE
        DKWGR+E+TEPA+F VKED N+SL+EYELVNV E
Subjt:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNVAE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein3.1e-4966.67Show/hide
Query:  GKSPTPASQDLQQSN----AAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPE
        G++P P S   + S            +KPVFVKV+QLKPGT+GHTL V VV  N+V QK G + S HLR  RI+ECLVGDET  ILFTARNDQV+ +KP 
Subjt:  GKSPTPASQDLQQSN----AAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPE

Query:  TTIILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
         T+ LRNAKIDMFKGSMRLAVDKWGRIE TEPA+  VKEDNNLSLVEYELVNV EE
Subjt:  TTIILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein1.3e-4468.18Show/hide
Query:  RKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETTIILRNAKIDMFKGSMRLAV
        RKPVFVKVEQLKPGT GHTL V V+ +N V+   R      S+S+  + +RI ECL+GDETG ILFTARNDQVD +KP  T+ILRN++IDMFKG+MRL V
Subjt:  RKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNV
        DKWGRIE T  A+F VKEDNNLSLVEYEL+NV
Subjt:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGGGAAATCACCTACGCCGGCATCGCAGGACCTGCAGCAGAGCAATGCGGCGGCGAGACCAGGCCTGAGGAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAA
GCCTGGCACTAATGGCCATACACTCATCGTCACGGTTGTTAGCTCCAATACCGTGTTGCAGAAGGGTCGATCGGTGTCTCAGCACCTTCGTCAGACGCGGATCGCTGAGT
GCCTTGTTGGGGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCAGAGACAACTATCATTCTTCGGAATGCAAAGATTGACATG
TTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACCGAGCCTGCAAATTTCGTCGTCAAGGAAGACAATAACCTATCTTTAGTTGAGTATGA
ACTTGTGAATGTTGCAGAGGAATGA
mRNA sequenceShow/hide mRNA sequence
GTAGAATACCCATAATTGGTCAAATTATTTTGCCTTTGAAAAACCAGAAGACAAAAGCGGAATCAAGATGCCTATATAAACGCCCCCCCTGCAACAACCCACAGATGACA
ACGCTTGAAAGAGAGAGAGACCGGTAGAGAAGAGAGATTTTCGATCGATTTACGCGAATCGGGATTAGGGTTTGGCGTGCTGTTGATCTTCGTCTTCGGCATCAATGGCG
ACGGGGAAATCACCTACGCCGGCATCGCAGGACCTGCAGCAGAGCAATGCGGCGGCGAGACCAGGCCTGAGGAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGG
CACTAATGGCCATACACTCATCGTCACGGTTGTTAGCTCCAATACCGTGTTGCAGAAGGGTCGATCGGTGTCTCAGCACCTTCGTCAGACGCGGATCGCTGAGTGCCTTG
TTGGGGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCAGAGACAACTATCATTCTTCGGAATGCAAAGATTGACATGTTCAAA
GGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACCGAGCCTGCAAATTTCGTCGTCAAGGAAGACAATAACCTATCTTTAGTTGAGTATGAACTTGT
GAATGTTGCAGAGGAATGAGAAGGTCGTACTGGAGGCCAACTTATGCATACAATGGATTGAGATGGTGGTCATCGAGTTTCCTGGTAATCCGCTGATGTGAATACATAAC
AACGCTATGTTATAGTTTTGTATGGGTGAAGTATTTAAACGAACAATCCCCTGATTTCGTCTAAACTGCAAAACAATGAAAGCTATTCTATGTGGGCATGACTTACATGA
CGCCATGTTCAGTCGGGTATAGGTATAACTAGGGTACTAGTTGGCTCTGATAACTCTGGAAATGTAATCGAGCATTTATCACGATGAAGAATGCTTTTGGTTTGGCTCTG
ATAACGTATATAACATGCAGAGTTTAAATTTGCTGGGCA
Protein sequenceShow/hide protein sequence
MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVTVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPETTIILRNAKIDM
FKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE