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Tan0003717 (gene) of Snake gourd v1 genome

Gene IDTan0003717
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosomal RNA small subunit methyltransferase A
Genome locationLG02:93313146..93314684
RNA-Seq ExpressionTan0003717
SyntenyTan0003717
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585342.1 hypothetical protein SDJN03_18075, partial [Cucurbita argyrosperma subsp. sororia]1.6e-7892.21Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGAN+SSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA
        WSEPHGPGF SDD+TDNSFAVLVPCYGR+YNDFVDETKN+ILSA GNINDSF A
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA

KAG7020253.1 hypothetical protein SDJN02_16936, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-7992.86Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGAN+SSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKN+ILSA GNINDSF A
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA

XP_022132228.1 uncharacterized protein LOC111005141 isoform X1 [Momordica charantia]8.3e-8087.5Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWWLWSGK+KEPR+SNGS LNASLDTAIREPDTLKFPLVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPAATISCVSKESPDME
        WSEP+GPGFQSDDD DNSFAVLVPCYG +YNDFVDETKN+ILSAVGNINDSF AA   C    S   E
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPAATISCVSKESPDME

XP_022951746.1 uncharacterized protein LOC111454487 [Cucurbita moschata]4.1e-7992.86Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGAN+SSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKN+ILSA GNINDSF A
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA

XP_023001877.1 uncharacterized protein LOC111495931 [Cucurbita maxima]2.4e-7992.86Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGAN+SSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKN+ILSA GNINDSF A
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA

TrEMBL top hitse value%identityAlignment
A0A0A0LLD0 Uncharacterized protein3.1e-8088.76Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRTSN-GSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPR+SN GSALNASLDTA RE DTLKFPLVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSN-GSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPAATISCVSKESPDME
        GWSEPHGPGFQSDD++DNSFAVLVPCYGRIYNDFVDETKN+ILSAVGNINDSF AA   C S  + + E
Subjt:  GWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPAATISCVSKESPDME

A0A5A7VFJ3 Ribosomal RNA small subunit methyltransferase A1.7e-7893.55Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRTSN-GSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPR+SN GSALNASLDTA RE DTLKFPLVNGAN+SSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSN-GSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA
        GWSEPHGPGFQSDD++DNSFAVLVPCYGRIYNDFVDETKN+ILSAVGNINDSF A
Subjt:  GWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA

A0A6J1BRV5 uncharacterized protein LOC111005141 isoform X14.0e-8087.5Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWWLWSGK+KEPR+SNGS LNASLDTAIREPDTLKFPLVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPAATISCVSKESPDME
        WSEP+GPGFQSDDD DNSFAVLVPCYG +YNDFVDETKN+ILSAVGNINDSF AA   C    S   E
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPAATISCVSKESPDME

A0A6J1GID2 uncharacterized protein LOC1114544872.0e-7992.86Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGAN+SSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKN+ILSA GNINDSF A
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA

A0A6J1KME1 uncharacterized protein LOC1114959311.2e-7992.86Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGAN+SSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKN+ILSA GNINDSF A
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G38060.1 unknown protein6.7e-1149.32Show/hide
Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFP
        SGSES      D  +WS+GW+EPHGP FQSDD+  D  F VLVPCY R   +      N +LSAV N+ +  P
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFP

AT4G38060.2 unknown protein6.7e-1149.32Show/hide
Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFP
        SGSES      D  +WS+GW+EPHGP FQSDD+  D  F VLVPCY R   +      N +LSAV N+ +  P
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFP

AT5G65480.1 unknown protein5.9e-1534.48Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSAL--NASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWS
        M+V+FP+L  WL  G + + R    S    ++SL  ++++  T K       + SSS ++ KR W  R       E D +      G V   E DD +WS
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSAL--NASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWS

Query:  IGWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILS
        IGW EPHGPGF+++DD    F VLVP Y ++ +   ++  N   S
Subjt:  IGWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNNILS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGGCATTTCCCCAACTCTCCTGGTGGTTGTGGAGTGGGAAGCATAAAGAACCTCGAACCTCTAATGGGTCTGCTTTAAATGCTTCACTAGATACAGCCATTCG
GGAACCGGATACTCTAAAGTTTCCCTTGGTTAATGGGGCCAACGTGTCATCCTCGTCTAGAAGGGTGAAGAGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGG
AATATGATATTGTTCTTGTCCCATCTGATGGAGGATGCGTTTCAGGGTCTGAGTCTGATGATTCAGACTGGTCAATTGGATGGTCAGAACCCCATGGACCTGGATTCCAG
AGCGATGATGACACAGACAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGTATTTACAATGATTTTGTGGACGAAACTAAGAACAATATCCTAAGTGCTGTTGGGAA
CATCAACGATAGCTTTCCTGCCGCTACGATTTCTTGTGTAAGCAAAGAATCTCCAGACATGGAGGAGCCATTAGGATTTATAATGGTTGCAGCACACGGATGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGGCATTTCCCCAACTCTCCTGGTGGTTGTGGAGTGGGAAGCATAAAGAACCTCGAACCTCTAATGGGTCTGCTTTAAATGCTTCACTAGATACAGCCATTCG
GGAACCGGATACTCTAAAGTTTCCCTTGGTTAATGGGGCCAACGTGTCATCCTCGTCTAGAAGGGTGAAGAGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGG
AATATGATATTGTTCTTGTCCCATCTGATGGAGGATGCGTTTCAGGGTCTGAGTCTGATGATTCAGACTGGTCAATTGGATGGTCAGAACCCCATGGACCTGGATTCCAG
AGCGATGATGACACAGACAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGTATTTACAATGATTTTGTGGACGAAACTAAGAACAATATCCTAAGTGCTGTTGGGAA
CATCAACGATAGCTTTCCTGCCGCTACGATTTCTTGTGTAAGCAAAGAATCTCCAGACATGGAGGAGCCATTAGGATTTATAATGGTTGCAGCACACGGATGCTAA
Protein sequenceShow/hide protein sequence
MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANVSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQ
SDDDTDNSFAVLVPCYGRIYNDFVDETKNNILSAVGNINDSFPAATISCVSKESPDMEEPLGFIMVAAHGC