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Tan0003718 (gene) of Snake gourd v1 genome

Gene IDTan0003718
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG09:37473786..37474723
RNA-Seq ExpressionTan0003718
SyntenyTan0003718
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]5.3e-2961.87Show/hide
Query:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR
        M E  SV+EHVL+MM HFN+AEMNGA IDE+S VSFILE+LP+SFLQFRSNAVMNKI YTLTTLLNELQ F+SLM+ +  + E NVA   R +HRG TS 
Subjt:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR

Query:  TKSVAHS--HLKGKKKKMKKGKADRVAAQKGKKVKEVAK
        TKS+  S  + K KKKK  +G    +AA K  K  + AK
Subjt:  TKSVAHS--HLKGKKKKMKKGKADRVAAQKGKKVKEVAK

KAA0045330.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]2.4e-2962.5Show/hide
Query:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR
        M E  SVQEHVL+MM HFN+AEMNGA IDE+S VSFIL++LP+SFLQFRSNAVMNKI+YTLTTLLNELQ F+SLM+ +  + E NVA   R +HRG TS 
Subjt:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR

Query:  TKSVAHSHLKGKKKKMKKGKADRV---AAQKGKKVK
        TKS+  S    K KK K G+ ++V   AA+  KK K
Subjt:  TKSVAHSHLKGKKKKMKKGKADRV---AAQKGKKVK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]5.3e-2961.87Show/hide
Query:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR
        M E  SV+EHVL+MM HFN+AEMNGA IDE+S VSFILE+LP+SFLQFRSNAVMNKI YTLTTLLNELQ F+SLM+ +  + E NVA   R +HRG TS 
Subjt:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR

Query:  TKSVAHS--HLKGKKKKMKKGKADRVAAQKGKKVKEVAK
        TKS+  S  + K KKKK  +G    +AA K  K  + AK
Subjt:  TKSVAHS--HLKGKKKKMKKGKADRVAAQKGKKVKEVAK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]5.3e-2961.87Show/hide
Query:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR
        M E  SV+EHVL+MM HFN+AEMNGA IDE+S VSFILE+LP+SFLQFRSNAVMNKI YTLTTLLNELQ F+SLM+ +  + E NVA   R +HRG TS 
Subjt:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR

Query:  TKSVAHS--HLKGKKKKMKKGKADRVAAQKGKKVKEVAK
        TKS+  S  + K KKKK  +G    +AA K  K  + AK
Subjt:  TKSVAHS--HLKGKKKKMKKGKADRVAAQKGKKVKEVAK

TYK28896.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-2963.97Show/hide
Query:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR
        M E  SV+EHVL+MM HFN+AEMNGA IDE+S VSFIL++LP+SFLQFRSNAVMNKI YTLTTLLNELQNF+SLM+ +  + E NVA   R +HRG T  
Subjt:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR

Query:  TKSVAHS--HLKGKKKKMKKG-KADRVAAQKGKKVK
        TKSV  S  + K KKKK  +G KA+  AA+  KK K
Subjt:  TKSVAHS--HLKGKKKKMKKG-KADRVAAQKGKKVK

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein2.6e-2961.87Show/hide
Query:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR
        M E  SV+EHVL+MM HFN+AEMNGA IDE+S VSFILE+LP+SFLQFRSNAVMNKI YTLTTLLNELQ F+SLM+ +  + E NVA   R +HRG TS 
Subjt:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR

Query:  TKSVAHS--HLKGKKKKMKKGKADRVAAQKGKKVKEVAK
        TKS+  S  + K KKKK  +G    +AA K  K  + AK
Subjt:  TKSVAHS--HLKGKKKKMKKGKADRVAAQKGKKVKEVAK

A0A5A7TQ86 Retrotransposon protein, putative, Ty1-copia subclass1.2e-2962.5Show/hide
Query:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR
        M E  SVQEHVL+MM HFN+AEMNGA IDE+S VSFIL++LP+SFLQFRSNAVMNKI+YTLTTLLNELQ F+SLM+ +  + E NVA   R +HRG TS 
Subjt:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR

Query:  TKSVAHSHLKGKKKKMKKGKADRV---AAQKGKKVK
        TKS+  S    K KK K G+ ++V   AA+  KK K
Subjt:  TKSVAHSHLKGKKKKMKKGKADRV---AAQKGKKVK

A0A5A7V4M1 Gag/pol protein2.6e-2961.87Show/hide
Query:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR
        M E  SV+EHVL+MM HFN+AEMNGA IDE+S VSFILE+LP+SFLQFRSNAVMNKI YTLTTLLNELQ F+SLM+ +  + E NVA   R +HRG TS 
Subjt:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR

Query:  TKSVAHS--HLKGKKKKMKKGKADRVAAQKGKKVKEVAK
        TKS+  S  + K KKKK  +G    +AA K  K  + AK
Subjt:  TKSVAHS--HLKGKKKKMKKGKADRVAAQKGKKVKEVAK

A0A5D3CPJ6 Gag/pol protein2.6e-2961.87Show/hide
Query:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR
        M E  SV+EHVL+MM HFN+AEMNGA IDE+S VSFILE+LP+SFLQFRSNAVMNKI YTLTTLLNELQ F+SLM+ +  + E NVA   R +HRG TS 
Subjt:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR

Query:  TKSVAHS--HLKGKKKKMKKGKADRVAAQKGKKVKEVAK
        TKS+  S  + K KKKK  +G    +AA K  K  + AK
Subjt:  TKSVAHS--HLKGKKKKMKKGKADRVAAQKGKKVKEVAK

A0A5D3DYU3 Gag/pol protein1.5e-2963.97Show/hide
Query:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR
        M E  SV+EHVL+MM HFN+AEMNGA IDE+S VSFIL++LP+SFLQFRSNAVMNKI YTLTTLLNELQNF+SLM+ +  + E NVA   R +HRG T  
Subjt:  MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVA--YRSYHRGLTSR

Query:  TKSVAHS--HLKGKKKKMKKG-KADRVAAQKGKKVK
        TKSV  S  + K KKKK  +G KA+  AA+  KK K
Subjt:  TKSVAHS--HLKGKKKKMKKG-KADRVAAQKGKKVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAATGGACGTCTGTCCAAGAACATGTTCTAGACATGATGACCCACTTTAATCTGGCGGAGATGAACGGGGCTTCGATTGATGAGTCGAGCCATGTCAGTTTTAT
CTTGGAGACTCTTCCGAAGAGTTTCCTTCAGTTTCGTAGCAACGCTGTTATGAACAAGATAAACTACACACTGACTACCCTTCTAAACGAGCTACAGAACTTCCAGTCCT
TGATGAGGACCAGGACACCAGAAGCTGAGACAAATGTTGCCTATAGATCATATCACAGGGGTTTGACCTCTAGGACTAAATCTGTTGCTCATTCTCACCTGAAAGGGAAG
AAGAAGAAGATGAAGAAGGGTAAAGCTGACCGAGTTGCCGCCCAAAAGGGTAAGAAGGTCAAGGAAGTTGCAAAAAAAAAAGTGTTTCCACTGCAATGGGGATGA
mRNA sequenceShow/hide mRNA sequence
TGAAGTGTTCGTGATGCATACGATCGGTGGATCAGGGCCAATGAAAAGGCCAAGGTCTACATAATTGCCAGCTTGTCTGAAGTACTGGCAAAGAAGCATGAGTTGATGGT
CACCTCTAAGGAGATCATGGAGTCATTGCAACACATGTTTGGATAACAGTCCTTTCAGGTCAGACATGACTCACTCAAACACGTCTTCAACGTCTGGATGAAAGAATGGA
CGTCTGTCCAAGAACATGTTCTAGACATGATGACCCACTTTAATCTGGCGGAGATGAACGGGGCTTCGATTGATGAGTCGAGCCATGTCAGTTTTATCTTGGAGACTCTT
CCGAAGAGTTTCCTTCAGTTTCGTAGCAACGCTGTTATGAACAAGATAAACTACACACTGACTACCCTTCTAAACGAGCTACAGAACTTCCAGTCCTTGATGAGGACCAG
GACACCAGAAGCTGAGACAAATGTTGCCTATAGATCATATCACAGGGGTTTGACCTCTAGGACTAAATCTGTTGCTCATTCTCACCTGAAAGGGAAGAAGAAGAAGATGA
AGAAGGGTAAAGCTGACCGAGTTGCCGCCCAAAAGGGTAAGAAGGTCAAGGAAGTTGCAAAAAAAAAAGTGTTTCCACTGCAATGGGGATGACCACTGGAAGCGAAACTG
TCCCAAGTTCCTTGCCGAGAGGAAGAATACAGGGAGTTAGTTCCTGGCAGCAGCTGCGAGAGGGTGAGGTGACTCTACGGGTTGGATCCGAGGAGATTGTCTCTGCTGCA
GCGATCGACAAAGTGAAACTCTATTTTGGCAGGAATTACTTATTGTTAGACAATTTGTATATAG
Protein sequenceShow/hide protein sequence
MKEWTSVQEHVLDMMTHFNLAEMNGASIDESSHVSFILETLPKSFLQFRSNAVMNKINYTLTTLLNELQNFQSLMRTRTPEAETNVAYRSYHRGLTSRTKSVAHSHLKGK
KKKMKKGKADRVAAQKGKKVKEVAKKKVFPLQWG