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Tan0003754 (gene) of Snake gourd v1 genome

Gene IDTan0003754
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG06:43753967..43757012
RNA-Seq ExpressionTan0003754
SyntenyTan0003754
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]1.8e-0644.21Show/hide
Query:  LLSMLSVLCDNNAVVEIEL---------CTESSSSVNSLKVLKFDILYVARVVSHVY--------ICLYIRGVMPPRTSRRRRQDQDETQDPTQG
        LL  L+VLCDN+A+VEIEL            S S+  S  +++ D +    VV  V         +  + +GVMPPR+SRRRRQ++DETQDPTQG
Subjt:  LLSMLSVLCDNNAVVEIEL---------CTESSSSVNSLKVLKFDILYVARVVSHVY--------ICLYIRGVMPPRTSRRRRQDQDETQDPTQG

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.3e-0443.69Show/hide
Query:  LSMLSVLCDNNAVVEIEL-----------CTESSSSV------NSLKVLKFDILYVARVVSHVYICLYIR---------GVMPPRTSRRRRQDQDETQDP
        LS LSVL DN+ VVEIEL            +ES+SS        S+ V  F  + + R     ++    R         GVMPPRTSRRRRQ+QD TQDP
Subjt:  LSMLSVLCDNNAVVEIEL-----------CTESSSSV------NSLKVLKFDILYVARVVSHVYICLYIR---------GVMPPRTSRRRRQDQDETQDP

Query:  TQG
        TQG
Subjt:  TQG

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.3e-0443.69Show/hide
Query:  LSMLSVLCDNNAVVEIEL-----------CTESSSSV------NSLKVLKFDILYVARVVSHVYICLYIR---------GVMPPRTSRRRRQDQDETQDP
        LS LSVL DN+ VVEIEL            +ES+SS        S+ V  F  + + R     ++    R         GVMPPRTSRRRRQ+QD TQDP
Subjt:  LSMLSVLCDNNAVVEIEL-----------CTESSSSV------NSLKVLKFDILYVARVVSHVYICLYIR---------GVMPPRTSRRRRQDQDETQDP

Query:  TQG
        TQG
Subjt:  TQG

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase4.0e-0443.69Show/hide
Query:  LSMLSVLCDNNAVVEIEL-----------CTESSSSV------NSLKVLKFDILYVARVVSHVYICLYIR---------GVMPPRTSRRRRQDQDETQDP
        LS LSVL DN+ VVEIEL            +ES+SS        S+ V  F  + + R     ++    R         GVMPPRTSRRRRQ+QD TQDP
Subjt:  LSMLSVLCDNNAVVEIEL-----------CTESSSSV------NSLKVLKFDILYVARVVSHVYICLYIR---------GVMPPRTSRRRRQDQDETQDP

Query:  TQG
        TQG
Subjt:  TQG

A0A5D3BSA6 Retrotrans_gag domain-containing protein8.7e-0744.21Show/hide
Query:  LLSMLSVLCDNNAVVEIEL---------CTESSSSVNSLKVLKFDILYVARVVSHVY--------ICLYIRGVMPPRTSRRRRQDQDETQDPTQG
        LL  L+VLCDN+A+VEIEL            S S+  S  +++ D +    VV  V         +  + +GVMPPR+SRRRRQ++DETQDPTQG
Subjt:  LLSMLSVLCDNNAVVEIEL---------CTESSSSVNSLKVLKFDILYVARVVSHVY--------ICLYIRGVMPPRTSRRRRQDQDETQDPTQG

A0A5D3D150 Reverse transcriptase4.0e-0443.69Show/hide
Query:  LSMLSVLCDNNAVVEIEL-----------CTESSSSV------NSLKVLKFDILYVARVVSHVYICLYIR---------GVMPPRTSRRRRQDQDETQDP
        LS LSVL DN+ VVEIEL            +ES+SS        S+ V  F  + + R     ++    R         GVMPPRTSRRRRQ+QD TQDP
Subjt:  LSMLSVLCDNNAVVEIEL-----------CTESSSSV------NSLKVLKFDILYVARVVSHVYICLYIR---------GVMPPRTSRRRRQDQDETQDP

Query:  TQG
        TQG
Subjt:  TQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACGTGTTTGGGTTTGTTTTGGTCATATACTGTTGTCGATGTTGAGTGTACTCTGTGACAACAATGCTGTCGTAGAGATCGAGCTCTGTACTGAAAGTTCATCGTC
AGTAAACTCTTTGAAAGTTCTTAAGTTTGATATTTTGTACGTGGCTAGAGTTGTATCACATGTCTATATTTGTTTGTACATTAGAGGAGTCATGCCACCACGTACTAGCA
GACGACGCAGGCAGGATCAAGACGAGACGCAGGATCCTACCCAAGGGCCAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCACGTGTTTGGGTTTGTTTTGGTCATATACTGTTGTCGATGTTGAGTGTACTCTGTGACAACAATGCTGTCGTAGAGATCGAGCTCTGTACTGAAAGTTCATCGTC
AGTAAACTCTTTGAAAGTTCTTAAGTTTGATATTTTGTACGTGGCTAGAGTTGTATCACATGTCTATATTTGTTTGTACATTAGAGGAGTCATGCCACCACGTACTAGCA
GACGACGCAGGCAGGATCAAGACGAGACGCAGGATCCTACCCAAGGGCCAATCTGA
Protein sequenceShow/hide protein sequence
MPRVWVCFGHILLSMLSVLCDNNAVVEIELCTESSSSVNSLKVLKFDILYVARVVSHVYICLYIRGVMPPRTSRRRRQDQDETQDPTQGPI