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Tan0003764 (gene) of Snake gourd v1 genome

Gene IDTan0003764
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:20954170..20954541
RNA-Seq ExpressionTan0003764
SyntenyTan0003764
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026280.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.0e-2665.98Show/hide
Query:  GREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVMRCPEDRKVDLTAFLLQ
        G   S+ ESS P  E N+EEQ+  R+ QRL   +  AQ+D EKKYGIERLKALGATTF GTT+P DAE WL LIEKCF+V RC EDRKV+L AFLLQ
Subjt:  GREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVMRCPEDRKVDLTAFLLQ

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-2960.48Show/hide
Query:  MARGGKRGR-QVETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     +T         G   S+ ESS P  E NMEEQ+  R+ QRL   + SAQ+DPEKKYGIERLKALGATTF GTT+PADAE WL LIEKC
Subjt:  MARGGKRGR-QVETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRVMRCPEDRKVDLTAFLLQERSG
        FRV RCPEDRKV+L +FLLQ   G
Subjt:  FRVMRCPEDRKVDLTAFLLQERSG

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-2557.5Show/hide
Query:  MARGGKRGR-QVETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPEKKYG ERLKALGATTF GTT+P D E WL LIEKC
Subjt:  MARGGKRGR-QVETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRVMRCPEDRKVDLTAFLLQ
        FRV R  EDRKV+L AFLLQ
Subjt:  FRVMRCPEDRKVDLTAFLLQ

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.8e-2557.5Show/hide
Query:  MARGGKRGR-QVETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPEKKYG ERLKALGATTF GTT+P D E WL LIEKC
Subjt:  MARGGKRGR-QVETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRVMRCPEDRKVDLTAFLLQ
        FRV R  EDRKV+L AFLLQ
Subjt:  FRVMRCPEDRKVDLTAFLLQ

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]1.7e-2877.78Show/hide
Query:  MEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVMRCPEDRKVDLTAFLLQE
        ME+++F RITQRLA SVGS Q DPEKK+GIERLKALGATTF+GTTDP DAE+WL LIEKCF+VMRCPED KV+L  FLLQ+
Subjt:  MEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVMRCPEDRKVDLTAFLLQE

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein3.9e-2665.98Show/hide
Query:  GREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVMRCPEDRKVDLTAFLLQ
        G   S+ ESS P  E N+EEQ+  R+ QRL   +  AQ+D EKKYGIERLKALGATTF GTT+P DAE WL LIEKCF+V RC EDRKV+L AFLLQ
Subjt:  GREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVMRCPEDRKVDLTAFLLQ

A0A5A7SKG0 Uncharacterized protein1.9e-2559.46Show/hide
Query:  ETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVMRCPEDRKV
        E GT +AT    RE + G+S+H   + NMEE+IF +I QRLA+ V  AQAD EKKYGIER+KALGAT F+GT D  + E WL LIEKCF VM C EDRKV
Subjt:  ETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVMRCPEDRKV

Query:  DLTAFLLQERS
        +L  FLL++R+
Subjt:  DLTAFLLQERS

A0A5A7T1M0 Reverse transcriptase8.7e-2657.5Show/hide
Query:  MARGGKRGR-QVETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPEKKYG ERLKALGATTF GTT+P D E WL LIEKC
Subjt:  MARGGKRGR-QVETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRVMRCPEDRKVDLTAFLLQ
        FRV R  EDRKV+L AFLLQ
Subjt:  FRVMRCPEDRKVDLTAFLLQ

A0A5D3BB91 Reverse transcriptase8.7e-2657.5Show/hide
Query:  MARGGKRGR-QVETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPEKKYG ERLKALGATTF GTT+P D E WL LIEKC
Subjt:  MARGGKRGR-QVETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRVMRCPEDRKVDLTAFLLQ
        FRV R  EDRKV+L AFLLQ
Subjt:  FRVMRCPEDRKVDLTAFLLQ

A0A5D3DES5 DNA/RNA polymerases superfamily protein9.9e-3060.48Show/hide
Query:  MARGGKRGR-QVETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     +T         G   S+ ESS P  E NMEEQ+  R+ QRL   + SAQ+DPEKKYGIERLKALGATTF GTT+PADAE WL LIEKC
Subjt:  MARGGKRGR-QVETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRVMRCPEDRKVDLTAFLLQERSG
        FRV RCPEDRKV+L +FLLQ   G
Subjt:  FRVMRCPEDRKVDLTAFLLQERSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGAAAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTAAGCAAGA
GGTGAATATGGAGGAACAGATCTTTACGCGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAAAGAAGTATGGCATTGAAAGACTGAAAG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCTGAGGTTTGGTTAAATCTGATTGAGAAGTGCTTTAGGGTCATGCGATGCCCTGAAGACAGGAAG
GTCGATTTAACAGCATTCTTACTCCAAGAAAGGAGCGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGAAAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTAAGCAAGA
GGTGAATATGGAGGAACAGATCTTTACGCGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAAAGAAGTATGGCATTGAAAGACTGAAAG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCTGAGGTTTGGTTAAATCTGATTGAGAAGTGCTTTAGGGTCATGCGATGCCCTGAAGACAGGAAG
GTCGATTTAACAGCATTCTTACTCCAAGAAAGGAGCGGATGA
Protein sequenceShow/hide protein sequence
MARGGKRGRQVETGTQEATGERGREVSEGESSHPKQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVMRCPEDRK
VDLTAFLLQERSG