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Tan0003771 (gene) of Snake gourd v1 genome

Gene IDTan0003771
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationLG06:53129608..53129811
RNA-Seq ExpressionTan0003771
SyntenyTan0003771
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBG95481.1 cold shock domain protein 1 [Prunus dulcis]3.8e-1458.73Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV
        M++L ++HA +DC RKEV LR PG  KV+F+G R++LPTC+IS I A+KLLKKGC  YLA+++
Subjt:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV

KAA0032756.1 putative Gag-pol protein [Cucumis melo var. makuwa]6.5e-1460.32Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV
        MNFL  ++A MDCHRKEVVLRKPG  +VVF+G RK++   +IS +KA KLL+KGCTT+L++++
Subjt:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV

TYJ98787.1 putative Gag-pol protein [Cucumis melo var. makuwa]6.5e-1460.32Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV
        MNFL  ++A MDCHRKEVVLRKPG  +VVF+G RK++   +IS +KA KLL+KGCTT+L++++
Subjt:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV

VVA36048.1 PREDICTED: reverse mRNAase, partial [Prunus dulcis]3.8e-1458.73Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV
        M++L ++HA +DC RKEV LR PG  KV+F+G R++LPTC+IS I A+KLLKKGC  YLA+++
Subjt:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV

VVA41697.1 PREDICTED: reverse mRNAase, partial [Prunus dulcis]3.8e-1458.73Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV
        M++L ++HA +DC RKEV LR PG  KV+F+G R++LPTC+IS I A+KLLKKGC  YLA+++
Subjt:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV

TrEMBL top hitse value%identityAlignment
A0A4Y1QUI9 Reverse transcriptase1.9e-1458.73Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV
        M++L ++HA +DC RKEV LR PG  KV+F+G R++LPTC+IS I A+KLLKKGC  YLA+++
Subjt:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV

A0A5A7SRT5 Putative Gag-pol protein3.2e-1460.32Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV
        MNFL  ++A MDCHRKEVVLRKPG  +VVF+G RK++   +IS +KA KLL+KGCTT+L++++
Subjt:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV

A0A5D3BI40 Putative Gag-pol protein3.2e-1460.32Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV
        MNFL  ++A MDCHRKEVVLRKPG  +VVF+G RK++   +IS +KA KLL+KGCTT+L++++
Subjt:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV

A0A5E4G8X6 Reverse transcriptase (Fragment)1.9e-1458.73Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV
        M++L ++HA +DC RKEV LR PG  KV+F+G R++LPTC+IS I A+KLLKKGC  YLA+++
Subjt:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV

A0A5E4GP44 Reverse transcriptase (Fragment)1.9e-1458.73Show/hide
Query:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV
        M++L ++HA +DC RKEV LR PG  KV+F+G R++LPTC+IS I A+KLLKKGC  YLA+++
Subjt:  MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTCTTATCCAGGTATCATGCCTTAATGGATTGTCATAGGAAGGAAGTTGTGTTGAGGAAGCCAGGTGACACTAAGGTTGTGTTTAAGGGGTATAGGAAGATATT
ACCTACTTGTATGATATCAACTATTAAAGCTAGAAAATTATTGAAGAAAGGTTGTACAACATATCTTGCATATGTAGTTTGTGCACCTGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATTTCTTATCCAGGTATCATGCCTTAATGGATTGTCATAGGAAGGAAGTTGTGTTGAGGAAGCCAGGTGACACTAAGGTTGTGTTTAAGGGGTATAGGAAGATATT
ACCTACTTGTATGATATCAACTATTAAAGCTAGAAAATTATTGAAGAAAGGTTGTACAACATATCTTGCATATGTAGTTTGTGCACCTGAGTAA
Protein sequenceShow/hide protein sequence
MNFLSRYHALMDCHRKEVVLRKPGDTKVVFKGYRKILPTCMISTIKARKLLKKGCTTYLAYVVCAPE