| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa] | 1.5e-187 | 64.44 | Show/hide |
Query: WKRKCPKFLAERK-NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIVS
WK CPK+L ++K +GK DLLV ETCLVE+ +AWILDSGATNHVCSS Q S++ L + E+TL+VG G+++SA A+ KL F K++ L+NLYIV
Subjt: WKRKCPKFLAERK-NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIVS
Query: GFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVKS
RNLVS+SCLIEH S++F +N+AFI G ICSA LENNLYVL+PN K+VLN E+F+TA T+ K+ ++SP N +LWHLRLGHINL+R +LVK+
Subjt: GFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVKS
Query: GLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGKS
GLLN L++ SLP CESCLEGKMTKRPF+GKGYRAKEPLELIHSDLCGPMNVKARGG+EYF+SFI DYSRYGY+YLM KSE LEKFK YKTEVENLL K
Subjt: GLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGKS
Query: LKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKCS
+K LRSDRGGEYMD FQDYMIEHGI SQLSAP VRS E ++ILNNVPSKSV ETPFELW GRK S
Subjt: LKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKCS
Query: LHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDRTSARVADGASTSTSVVDPST
L FRIWGCP HVLV+NPKKLEPRS+LC +VGYPKETRGGLF+DP+ENRV VSTNATFLEEDH+R+H PRSKLVL+E S RV D S+ V + +T
Subjt: LHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDRTSARVADGASTSTSVVDPST
Query: SSQIR-SQELGIPRRSGRVVRRP
S Q SQ L +PRRSGRVV +P
Subjt: SSQIR-SQELGIPRRSGRVVRRP
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| KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa] | 1.4e-185 | 62.95 | Show/hide |
Query: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
WKR CPK+LAE+K QGK DLLV ETCLVE+ DSAWI+DSGATNHVCSSFQGI SW+ L GE+T+RVG G +VSA A+ ++L +LLL+N+Y+V
Subjt: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
Query: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
RNL+S+ CL+E S++F +NK FI G ICSA LENNLYVL+ + K++LNTE+FKTA T+ K+ K+SPKEN HLWHLRLGHINLNR E+LVK
Subjt: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
Query: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
+GLL++LEENSLPVCESCLEGKMTKRPF+GKG+RAKEPLEL+HSDLCGPMNVKARGG+EYF++F DYSRYGY+YLM KSE LEKFK YK EVEN L K
Subjt: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
Query: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
++KT RSDRGGEYMD +FQ+Y++E GI SQLSAP VRS + +YILN VPSKSV ETP +LW+GRK
Subjt: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
Query: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
SL FRIWGCP HVL +NPKKLEPRSKLCL+VGYPK TRGG FYDPK+N+V VSTNATFLEEDH+R+H PRSK+VLNE+ + S RV + S T V
Subjt: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
Query: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
V +S++ + Q L PRRSGRV PI
Subjt: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
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| KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa] | 1.4e-185 | 62.95 | Show/hide |
Query: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
WKR CPK+LAE+K QGK DLLV ETCLVE+ DSAWI+DSGATNHVCSSFQGI SW+ L GE+T+RVG G +VSA A+ ++L +LLL+N+Y+V
Subjt: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
Query: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
RNL+S+ CL+E S++F +NK FI G ICSA LENNLYVL+ + K++LNTE+FKTA T+ K+ K+SPKEN HLWHLRLGHINLNR E+LVK
Subjt: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
Query: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
+GLL++LEENSLPVCESCLEGKMTKRPF+GKG+RAKEPLEL+HSDLCGPMNVKARGG+EYF++F DYSRYGY+YLM KSE LEKFK YK EVEN L K
Subjt: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
Query: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
++KT RSDRGGEYMD +FQ+Y++E GI SQLSAP VRS + +YILN VPSKSV ETP +LW+GRK
Subjt: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
Query: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
SL FRIWGCP HVL +NPKKLEPRSKLCL+VGYPK TRGG FYDPK+N+V VSTNATFLEEDH+R+H PRSK+VLNE+ + S RV + S T V
Subjt: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
Query: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
V +S++ + Q L PRRSGRV PI
Subjt: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
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| KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa] | 1.4e-185 | 62.95 | Show/hide |
Query: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
WKR CPK+LAE+K QGK DLLV ETCLVE+ DSAWI+DSGATNHVCSSFQGI SW+ L GE+T+RVG G +VSA A+ ++L +LLL+N+Y+V
Subjt: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
Query: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
RNL+S+ CL+E S++F +NK FI G ICSA LENNLYVL+ + K++LNTE+FKTA T+ K+ K+SPKEN HLWHLRLGHINLNR E+LVK
Subjt: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
Query: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
+GLL++LEENSLPVCESCLEGKMTKRPF+GKG+RAKEPLEL+HSDLCGPMNVKARGG+EYF++F DYSRYGY+YLM KSE LEKFK YK EVEN L K
Subjt: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
Query: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
++KT RSDRGGEYMD +FQ+Y++E GI SQLSAP VRS + +YILN VPSKSV ETP +LW+GRK
Subjt: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
Query: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
SL FRIWGCP HVL +NPKKLEPRSKLCL+VGYPK TRGG FYDPK+N+V VSTNATFLEEDH+R+H PRSK+VLNE+ + S RV + S T V
Subjt: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
Query: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
V +S++ + Q L PRRSGRV PI
Subjt: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
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| TYK14550.1 gag/pol protein [Cucumis melo var. makuwa] | 1.4e-185 | 62.95 | Show/hide |
Query: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
WKR CPK+LAE+K QGK DLLV ETCLVE+ DSAWI+DSGATNHVCSSFQGI SW+ L GE+T+RVG G +VSA A+ ++L +LLL+N+Y+V
Subjt: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
Query: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
RNL+S+ CL+E S++F +NK FI G ICSA LENNLYVL+ + K++LNTE+FKTA T+ K+ K+SPKEN HLWHLRLGHINLNR E+LVK
Subjt: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
Query: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
+GLL++LEENSLPVCESCLEGKMTKRPF+GKG+RAKEPLEL+HSDLCGPMNVKARGG+EYF++F DYSRYGY+YLM KSE LEKFK YK EVEN L K
Subjt: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
Query: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
++KT RSDRGGEYMD +FQ+Y++E GI SQLSAP VRS + +YILN VPSKSV ETP +LW+GRK
Subjt: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
Query: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
SL FRIWGCP HVL +NPKKLEPRSKLCL+VGYPK TRGG FYDPK+N+V VSTNATFLEEDH+R+H PRSK+VLNE+ + S RV + S T V
Subjt: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
Query: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
V +S++ + Q L PRRSGRV PI
Subjt: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SMH8 Gag/pol protein | 6.7e-186 | 62.95 | Show/hide |
Query: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
WKR CPK+LAE+K QGK DLLV ETCLVE+ DSAWI+DSGATNHVCSSFQGI SW+ L GE+T+RVG G +VSA A+ ++L +LLL+N+Y+V
Subjt: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
Query: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
RNL+S+ CL+E S++F +NK FI G ICSA LENNLYVL+ + K++LNTE+FKTA T+ K+ K+SPKEN HLWHLRLGHINLNR E+LVK
Subjt: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
Query: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
+GLL++LEENSLPVCESCLEGKMTKRPF+GKG+RAKEPLEL+HSDLCGPMNVKARGG+EYF++F DYSRYGY+YLM KSE LEKFK YK EVEN L K
Subjt: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
Query: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
++KT RSDRGGEYMD +FQ+Y++E GI SQLSAP VRS + +YILN VPSKSV ETP +LW+GRK
Subjt: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
Query: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
SL FRIWGCP HVL +NPKKLEPRSKLCL+VGYPK TRGG FYDPK+N+V VSTNATFLEEDH+R+H PRSK+VLNE+ + S RV + S T V
Subjt: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
Query: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
V +S++ + Q L PRRSGRV PI
Subjt: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
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| A0A5A7TZD0 Gag/pol protein | 7.2e-188 | 64.44 | Show/hide |
Query: WKRKCPKFLAERK-NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIVS
WK CPK+L ++K +GK DLLV ETCLVE+ +AWILDSGATNHVCSS Q S++ L + E+TL+VG G+++SA A+ KL F K++ L+NLYIV
Subjt: WKRKCPKFLAERK-NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIVS
Query: GFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVKS
RNLVS+SCLIEH S++F +N+AFI G ICSA LENNLYVL+PN K+VLN E+F+TA T+ K+ ++SP N +LWHLRLGHINL+R +LVK+
Subjt: GFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVKS
Query: GLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGKS
GLLN L++ SLP CESCLEGKMTKRPF+GKGYRAKEPLELIHSDLCGPMNVKARGG+EYF+SFI DYSRYGY+YLM KSE LEKFK YKTEVENLL K
Subjt: GLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGKS
Query: LKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKCS
+K LRSDRGGEYMD FQDYMIEHGI SQLSAP VRS E ++ILNNVPSKSV ETPFELW GRK S
Subjt: LKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKCS
Query: LHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDRTSARVADGASTSTSVVDPST
L FRIWGCP HVLV+NPKKLEPRS+LC +VGYPKETRGGLF+DP+ENRV VSTNATFLEEDH+R+H PRSKLVL+E S RV D S+ V + +T
Subjt: LHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDRTSARVADGASTSTSVVDPST
Query: SSQIR-SQELGIPRRSGRVVRRP
S Q SQ L +PRRSGRVV +P
Subjt: SSQIR-SQELGIPRRSGRVVRRP
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| A0A5A7V4M1 Gag/pol protein | 6.7e-186 | 62.95 | Show/hide |
Query: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
WKR CPK+LAE+K QGK DLLV ETCLVE+ DSAWI+DSGATNHVCSSFQGI SW+ L GE+T+RVG G +VSA A+ ++L +LLL+N+Y+V
Subjt: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
Query: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
RNL+S+ CL+E S++F +NK FI G ICSA LENNLYVL+ + K++LNTE+FKTA T+ K+ K+SPKEN HLWHLRLGHINLNR E+LVK
Subjt: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
Query: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
+GLL++LEENSLPVCESCLEGKMTKRPF+GKG+RAKEPLEL+HSDLCGPMNVKARGG+EYF++F DYSRYGY+YLM KSE LEKFK YK EVEN L K
Subjt: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
Query: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
++KT RSDRGGEYMD +FQ+Y++E GI SQLSAP VRS + +YILN VPSKSV ETP +LW+GRK
Subjt: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
Query: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
SL FRIWGCP HVL +NPKKLEPRSKLCL+VGYPK TRGG FYDPK+N+V VSTNATFLEEDH+R+H PRSK+VLNE+ + S RV + S T V
Subjt: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
Query: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
V +S++ + Q L PRRSGRV PI
Subjt: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
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| A0A5D3CPJ6 Gag/pol protein | 6.7e-186 | 62.95 | Show/hide |
Query: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
WKR CPK+LAE+K QGK DLLV ETCLVE+ DSAWI+DSGATNHVCSSFQGI SW+ L GE+T+RVG G +VSA A+ ++L +LLL+N+Y+V
Subjt: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
Query: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
RNL+S+ CL+E S++F +NK FI G ICSA LENNLYVL+ + K++LNTE+FKTA T+ K+ K+SPKEN HLWHLRLGHINLNR E+LVK
Subjt: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
Query: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
+GLL++LEENSLPVCESCLEGKMTKRPF+GKG+RAKEPLEL+HSDLCGPMNVKARGG+EYF++F DYSRYGY+YLM KSE LEKFK YK EVEN L K
Subjt: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
Query: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
++KT RSDRGGEYMD +FQ+Y++E GI SQLSAP VRS + +YILN VPSKSV ETP +LW+GRK
Subjt: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
Query: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
SL FRIWGCP HVL +NPKKLEPRSKLCL+VGYPK TRGG FYDPK+N+V VSTNATFLEEDH+R+H PRSK+VLNE+ + S RV + S T V
Subjt: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
Query: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
V +S++ + Q L PRRSGRV PI
Subjt: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
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| A0A5D3DS88 Gag/pol protein | 6.7e-186 | 62.95 | Show/hide |
Query: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
WKR CPK+LAE+K QGK DLLV ETCLVE+ DSAWI+DSGATNHVCSSFQGI SW+ L GE+T+RVG G +VSA A+ ++L +LLL+N+Y+V
Subjt: WKRKCPKFLAERK--NQGKCDLLVTETCLVESSDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIV
Query: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
RNL+S+ CL+E S++F +NK FI G ICSA LENNLYVL+ + K++LNTE+FKTA T+ K+ K+SPKEN HLWHLRLGHINLNR E+LVK
Subjt: SGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVK
Query: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
+GLL++LEENSLPVCESCLEGKMTKRPF+GKG+RAKEPLEL+HSDLCGPMNVKARGG+EYF++F DYSRYGY+YLM KSE LEKFK YK EVEN L K
Subjt: SGLLNDLEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGK
Query: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
++KT RSDRGGEYMD +FQ+Y++E GI SQLSAP VRS + +YILN VPSKSV ETP +LW+GRK
Subjt: SLKTLRSDRGGEYMDTEFQDYMIEHGITSQLSAP-------------------VRS---------------GELRIYILNNVPSKSVCETPFELWSGRKC
Query: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
SL FRIWGCP HVL +NPKKLEPRSKLCL+VGYPK TRGG FYDPK+N+V VSTNATFLEEDH+R+H PRSK+VLNE+ + S RV + S T V
Subjt: SLHQFRIWGCPTHVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDR----TSARVADGASTSTSV
Query: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
V +S++ + Q L PRRSGRV PI
Subjt: VDPSTSSQI-RSQELGIPRRSGRVVRRPI
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 7.0e-31 | 25.05 | Show/hide |
Query: WILDSGATNHVCSS----FQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIVSGFTRNLVSISCLIEHCISVSFELNKAFISFK
++LDSGA++H+ + ++ PL+ GE + A V+L + L D L+ NL+S+ L E +S+ F+ + IS
Subjt: WILDSGATNHVCSS----FQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIVSGFTRNLVSISCLIEHCISVSFELNKAFISFK
Query: GNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHIN------LNRNEKLVKSGLLNDLEENSLPVCESCLEGKMTKR
+N L V+K + + + + F+ K K N LWH R GHI+ + R LLN+L E S +CE CL GK +
Subjt: GNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHIN------LNRNEKLVKSGLLNDLEENSLPVCESCLEGKMTKR
Query: PFSGKGYRA--KEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGKSLKTLRSDRGGEYMDTEFQDYMIE
PF + K PL ++HSD+CGP+ YFV F+ ++ Y YL+ KS+ F+ + + E + L D G EY+ E + + ++
Subjt: PFSGKGYRA--KEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGKSLKTLRSDRGGEYMDTEFQDYMIE
Query: HGITSQLSAP------------VRS-------------------GELRI---YILNNVPSKSVCE---TPFELWSGRKCSLHQFRIWGCPTHVLVSNPK-
GI+ L+ P +R+ GE + Y++N +PS+++ + TP+E+W +K L R++G +V + N +
Subjt: HGITSQLSAP------------VRS-------------------GELRI---YILNNVPSKSVCE---TPFELWSGRKCSLHQFRIWGCPTHVLVSNPK-
Query: KLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLV
K + +S ++VGY E G +D + +V+ + E + V + + V
Subjt: KLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLV
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.5e-38 | 26.31 | Show/hide |
Query: ETCL-VESSDSAWILDSGATNHVCSSFQGIDSWQPLRE-------GEV-TLRVGYGELVSAAAIDTVKLHFS-GKYLLLDNLYIVSGFTRNLVSISCLIE
E C+ + +S W++D+ A++H P+R+ G+ T+++G A I + + + G L+L ++ V NL+S ++
Subjt: ETCL-VESSDSAWILDSGATNHVCSSFQGIDSWQPLRE-------GEV-TLRVGYGELVSAAAIDTVKLHFS-GKYLLLDNLYIVSGFTRNLVSISCLIE
Query: HCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKT-AETRTKKAKVSPKE-NVHLWHLRLGHINLNRNEKLVKSGLLNDLEENSLP
S+ N+ + KG+++ + K V L++T AE + + E +V LWH R+GH++ + L K L++ + ++
Subjt: HCISVSFELNKAFISFKGNVICSASLENNLYVLKPNSIKSVLNTELFKT-AETRTKKAKVSPKE-NVHLWHLRLGHINLNRNEKLVKSGLLNDLEENSLP
Query: VCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGKSLKTLRSDRGGEY
C+ CL GK + F R L+L++SD+CGPM +++ GG +YFV+FI D SR ++Y++ K + + F+ + VE G+ LK LRSD GGEY
Subjt: VCESCLEGKMTKRPFSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGKSLKTLRSDRGGEY
Query: MDTEFQDYMIEHGITSQLSAP-------------------VRS------------GE---LRIYILNNVPSKSVC-ETPFELWSGRKCSLHQFRIWGCP-
EF++Y HGI + + P VRS GE Y++N PS + E P +W+ ++ S +++GC
Subjt: MDTEFQDYMIEHGITSQLSAP-------------------VRS------------GE---LRIYILNNVPSKSVC-ETPFELWSGRKCSLHQFRIWGCP-
Query: -THVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDRTSARVADGASTSTSVVDPSTSSQIRSQ
HV KL+ +S C+++GY E G +DP + +V+ S + F E VR S+ V N + + ++ TS ST+ ++ Q
Subjt: -THVLVSNPKKLEPRSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLEEDHVRDHLPRSKLVLNEMDRTSARVADGASTSTSVVDPSTSSQIRSQ
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 1.0e-13 | 24.18 | Show/hide |
Query: ILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIVSGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVIC
++DSGA+ + S + P E+ + + + AI + +F +L+S+S L I+ F N S G V+
Subjt: ILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIVSGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVIC
Query: SASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVKSGLLNDLEENSLP-------VCESCLEGKMTKRPFSG
+ Y L S K ++ + + K K+K K L H LGH N +K +K + L+E+ + C CL GK TK
Subjt: SASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVKSGLLNDLEENSLP-------VCESCLEGKMTKRPFSG
Query: KGYRAK-----EPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSE--TLEKFKGYKTEVENLLGKSLKTLRSDRGGEYMDTEFQDYMI
KG R K EP + +H+D+ GP++ + YF+SF + +R+ ++Y +H + E L F ++N + ++ DRG EY + +
Subjt: KGYRAK-----EPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSE--TLEKFKGYKTEVENLLGKSLKTLRSDRGGEYMDTEFQDYMI
Query: EHGITS
GIT+
Subjt: EHGITS
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.3e-29 | 25.63 | Show/hide |
Query: SDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIVSGFTRNLVSISCLIEHCISVSFELNKAFISFK
S + W+LDSGAT+H+ S F + QP G+ + V G + + + L + L L N+ V +NL+S+ L + VS E A K
Subjt: SDSAWILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIVSGFTRNLVSISCLIEHCISVSFELNKAFISFK
Query: ----GNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVKSGLLNDLE-ENSLPVCESCLEGKMTKRP
G + ++ LY I S LF A S K WH RLGH + ++ + L+ L + C CL K K P
Subjt: ----GNVICSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVKSGLLNDLE-ENSLPVCESCLEGKMTKRP
Query: FSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGKSLKTLRSDRGGEYMDTEFQDYMIEHGI
FS + PLE I+SD+ + + Y Y+V F+ ++RY ++Y + +KS+ E F +K +EN + T SD GGE++ +Y +HGI
Subjt: FSGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGKSLKTLRSDRGGEYMDTEFQDYMIEHGI
Query: TSQLSAP----------------VRSG------------------ELRIYILNNVPSKSV-CETPFELWSGRKCSLHQFRIWGCPTHVLVS--NPKKLEP
+ S P V +G + +Y++N +P+ + E+PF+ G + + R++GC + + N KL+
Subjt: TSQLSAP----------------VRSG------------------ELRIYILNNVPSKSV-CETPFELWSGRKCSLHQFRIWGCPTHVLVS--NPKKLEP
Query: RSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLE
+S+ C+++GY L + +R+ +S + F E
Subjt: RSKLCLYVGYPKETRGGLFYDPKENRVLVSTNATFLE
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.1e-28 | 24.71 | Show/hide |
Query: WILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIVSGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVI
W+LDSGAT+H+ S F + QP G+ + + G + + L S + L L+ + V +NL+S+ L N+ + F
Subjt: WILDSGATNHVCSSFQGIDSWQPLREGEVTLRVGYGELVSAAAIDTVKLHFSGKYLLLDNLYIVSGFTRNLVSISCLIEHCISVSFELNKAFISFKGNVI
Query: CSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVKSGLLNDLE-ENSLPVCESCLEGKMTKRPFSGKGYRA
L + +L+ K L +++ + A K WH RLGH +L ++ + L L + L C C K K PFS +
Subjt: CSASLENNLYVLKPNSIKSVLNTELFKTAETRTKKAKVSPKENVHLWHLRLGHINLNRNEKLVKSGLLNDLE-ENSLPVCESCLEGKMTKRPFSGKGYRA
Query: KEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGKSLKTLRSDRGGEYMDTEFQDYMIEHGI---TSQLS
+PLE I+SD+ + + Y Y+V F+ ++RY ++Y + +KS+ + F +K+ VEN + TL SD GGE++ +DY+ +HGI TS
Subjt: KEPLELIHSDLCGPMNVKARGGYEYFVSFIADYSRYGYIYLMHKKSETLEKFKGYKTEVENLLGKSLKTLRSDRGGEYMDTEFQDYMIEHGI---TSQLS
Query: APVRSG-------------------------------ELRIYILNNVPSKSV-CETPFELWSGRKCSLHQFRIWGCPTHVLVS--NPKKLEPRSKLCLYV
P +G + +Y++N +P+ + ++PF+ G+ + + +++GC + + N KLE +SK C ++
Subjt: APVRSG-------------------------------ELRIYILNNVPSKSV-CETPFELWSGRKCSLHQFRIWGCPTHVLVS--NPKKLEPRSKLCLYV
Query: GYPKETRGGLFYDPKENRVLVSTNATFLE
GY L R+ S + F E
Subjt: GYPKETRGGLFYDPKENRVLVSTNATFLE
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