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Tan0003792 (gene) of Snake gourd v1 genome

Gene IDTan0003792
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPhotosystem II reaction center protein Z
Genome locationLG04:61075978..61076166
RNA-Seq ExpressionTan0003792
SyntenyTan0003792
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009539 - photosystem II reaction center (cellular component)
GO:0042651 - thylakoid membrane (cellular component)
InterPro domainsIPR002644 - Photosystem II PsbZ, reaction centre
IPR036512 - Photosystem II PsbZ superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2097496.1 hypothetical protein ES319_A01G174500v1 [Gossypium barbadense]1.2e-0672.58Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+VVFALI TSSILLISV +           KN+VFFGTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
QEG99361.1 photosystem II protein Z [Arenaria densissima]2.1e-0672.58Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+ VFALI TSSILLISV L L         KN+VF GTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
QKM79294.1 photosystem II protein Z [Clausia trichosepala]1.6e-0672.58Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+ VFALI+TSSILLISV + L         KNVVF GTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
TYH31660.1 hypothetical protein ES288_A01G189900v1 [Gossypium darwinii]1.2e-0672.58Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+VVFALI TSSILLISV +           KN+VFFGTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
YP_009522787.1 PsbZ [Vicia sepium]1.6e-0674.19Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+ VFALIVTSSILLISV L           KNVVF GTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
TrEMBL top hitse value%identityAlignment
A0A385CA72 Photosystem II reaction center protein Z7.7e-0774.19Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+ VFALIVTSSILLISV L           KNVVF GTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
A0A5D2HNX9 Photosystem II reaction center protein Z5.9e-0772.58Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+VVFALI TSSILLISV +           KN+VFFGTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
A0A5D2RSV4 Photosystem II reaction center protein Z5.9e-0772.58Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+VVFALI TSSILLISV +           KN+VFFGTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
A0A5J5X1D5 Photosystem II reaction center protein Z5.9e-0772.58Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+VVFALI TSSILLISV +           KN+VFFGTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
A0A6M9QJY0 Photosystem II reaction center protein Z7.7e-0772.58Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+ VFALI+TSSILLISV + L         KNVVF GTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
SwissProt top hitse value%identityAlignment
P56790 Photosystem II reaction center protein Z6.1e-0970.97Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+ VFALI+TSSILLISV +           KNVVF GTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
Q09MI1 Photosystem II reaction center protein Z1.4e-0870.97Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+ VFALI TSSILLISV +           KNVVF GTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
Q32902 Photosystem II reaction center protein Z4.7e-0972.58Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+ VFALIVTSSILLISV +           KNVVF GTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
Q4VZN6 Photosystem II reaction center protein Z6.1e-0972.58Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+ VFALIVTSSILLISV +           KNVVF GTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
Q9BBT2 Photosystem II reaction center protein Z1.0e-0870.97Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+ VFALI TSSILLISV +           KNVVF GTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
Arabidopsis top hitse value%identityAlignment
ATCG00300.1 YCF94.3e-1070.97Show/hide
Query:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS
        MTIAFQ+ VFALI+TSSILLISV +           KNVVF GTSLWI LVFLVGILNSLIS
Subjt:  MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATTGCTTTCCAAATGGTTGTTTTTGCATTAATTGTTACTTCATCAATCTTACTTATTAGTGTGTTGTTGTATTTGCTTCTCCTGATGGTTGGTCGGGTAACAAA
AAATGTTGTATTTTTCGGTACATCATTATGGATTGAATTAGTCTTTCTGGTGGGTATCCTTAATTCTCTTATCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTATTGCTTTCCAAATGGTTGTTTTTGCATTAATTGTTACTTCATCAATCTTACTTATTAGTGTGTTGTTGTATTTGCTTCTCCTGATGGTTGGTCGGGTAACAAA
AAATGTTGTATTTTTCGGTACATCATTATGGATTGAATTAGTCTTTCTGGTGGGTATCCTTAATTCTCTTATCTCTTGA
Protein sequenceShow/hide protein sequence
MTIAFQMVVFALIVTSSILLISVLLYLLLLMVGRVTKNVVFFGTSLWIELVFLVGILNSLIS