; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0003894 (gene) of Snake gourd v1 genome

Gene IDTan0003894
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG02:42349141..42349689
RNA-Seq ExpressionTan0003894
SyntenyTan0003894
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]6.5e-5665.38Show/hide
Query:  MTETNTMEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITN
        +T+ +T E+RMA++++KVN LMKA+EERD +IA LK+  E++D  ESS T  +K+ NKGK ++QE QPQ            +STSIA L VQQLQ+MI N
Subjt:  MTETNTMEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITN

Query:  SIRAQYGGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD
        SI+ QYGG +Q+  LYSKPYTKRIDN+RMP GY PPKFQQFDGKGN KQHVAHFIETCE  GTRGDLL KQFVRTLKGNAFD
Subjt:  SIRAQYGGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.9e-5567.05Show/hide
Query:  MEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITNSIRAQY
        +E  MA+M+ K+N LMK ++ERD +IA LK Q + ++  ESSQT VVK  +KGKNVVQE+QPQ             STS+A L VQQLQDMITNSIRAQY
Subjt:  MEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITNSIRAQY

Query:  GGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD
        GG SQ+S +YSKPYTKRIDNLRMP GY PPKFQQFDGKGN KQHVAHF+ETCEN G+RGD L +QFVR+LKGNAF+
Subjt:  GGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]7.1e-5566.48Show/hide
Query:  MEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITNSIRAQY
        +E  MA+M+ K+N LMK ++ERD +IA LK Q + ++  ESSQT VVK  +KGKNVVQE+QPQ             STS+A L VQQLQDMIT+SIRAQY
Subjt:  MEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITNSIRAQY

Query:  GGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD
        GG SQ+S +YSKPYTKRIDNLRMP GY PPKFQQFDGKGN KQHVAHF+ETCEN G+RGD L +QFVR+LKGNAF+
Subjt:  GGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]7.1e-5566.48Show/hide
Query:  MEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITNSIRAQY
        +E  MA+M+ K+N LMK ++ERD +IA LK Q + ++  ESSQT VVK  +KGKNVVQE+QPQ             STS+A L VQQLQDMIT+SIRAQY
Subjt:  MEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITNSIRAQY

Query:  GGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD
        GG SQ+S +YSKPYTKRIDNLRMP GY PPKFQQFDGKGN KQHVAHF+ETCEN G+RGD L +QFVR+LKGNAF+
Subjt:  GGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.9e-5567.05Show/hide
Query:  MEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITNSIRAQY
        +E  MA+M+ K+N LMK ++ERD +IA LK Q + ++  ESSQT VVK  +KGKNVVQE+QPQ             STS+A L VQQLQDMITNSIRAQY
Subjt:  MEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITNSIRAQY

Query:  GGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD
        GG SQ+S +YSKPYTKRIDNLRMP GY PPKFQQFDGKGN KQHVAHF+ETCEN G+RGD L +QFVR+LKGNAF+
Subjt:  GGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H3.1e-5665.38Show/hide
Query:  MTETNTMEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITN
        +T+ +T E+RMA++++KVN LMKA+EERD +IA LK+  E++D  ESS T  +K+ NKGK ++QE QPQ            +STSIA L VQQLQ+MI N
Subjt:  MTETNTMEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITN

Query:  SIRAQYGGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD
        SI+ QYGG +Q+  LYSKPYTKRIDN+RMP GY PPKFQQFDGKGN KQHVAHFIETCE  GTRGDLL KQFVRTLKGNAFD
Subjt:  SIRAQYGGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD

A0A5A7UU70 Ty3-gypsy retrotransposon protein7.7e-5564.29Show/hide
Query:  MTETNTMEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITN
        +T+ +T E+RMA++++KVN LMKA+EERD +IA LK+  E++D  ESS T ++K+ NKGK ++QE QPQ            +STSIA L VQQLQ+MI N
Subjt:  MTETNTMEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITN

Query:  SIRAQYGGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD
        SI+ QY G +Q+  LYSKPYTKRIDN+RMP  Y PPKFQQFDGKGN KQHVAHFIETCE  GTRGDLL KQFVRTLKGNAFD
Subjt:  SIRAQYGGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD

A0A5A7UUI7 Ty3-gypsy retrotransposon protein1.3e-5464.84Show/hide
Query:  MTETNTMEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITN
        +T  +T E RMA++++KVN LMK +EERD +IA+LK+  E++D  ESS    VK+ +KGK V+QE QPQ            +STSIA L VQQLQ+MI +
Subjt:  MTETNTMEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITN

Query:  SIRAQYGGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD
        SI+ QYGG +Q+  LYSKPYTKRIDNLRMP GY PPKFQQFDGKGN KQHVAHFIETCE  GTRGDLL KQFVRTLKGNAFD
Subjt:  SIRAQYGGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD

A0A5A7UXF0 Ty3-gypsy retrotransposon protein5.9e-5564.84Show/hide
Query:  MTETNTMEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITN
        +T  +T E RMA++++KVN LMK +EERD +IA+LK+  E++D  ESS   +VK+ +KGK V+QE QPQ            +STSIA L VQQLQ+MI +
Subjt:  MTETNTMEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITN

Query:  SIRAQYGGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD
        SI+ QYGG +Q+  LYSKPYTKRIDNLRMP GY PPKFQQFDGKGN KQHVAHFIETCE  GTRGDLL KQFVRTLKGNAFD
Subjt:  SIRAQYGGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD

A0A5A7V2W9 Ty3-gypsy retrotransposon protein1.3e-5464.84Show/hide
Query:  MTETNTMEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITN
        +T  +T E RMA++++KVN LMK +EERD +IA+LK+  E+ D  ESS    VK+ +KGK V+QE QPQ            +STSIA L VQQLQ+MI N
Subjt:  MTETNTMEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITN

Query:  SIRAQYGGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD
        SI+ QYGG +Q+  LYSKPYTKRIDNLRMP GY PPKFQQFDGKGN KQHVAHFIETCE  GTRGDLL KQFV+TLKGNAFD
Subjt:  SIRAQYGGVSQSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAAACAAACACTATGGAAGAAAGAATGGCGAAGATGCAGGAAAAAGTCAACGACTTAATGAAAGCGATTGAAGAAAGAGATTCTCAAATTGCATATTTAAAGAG
TCAAAGTGAGAATCAAGATGTCGTTGAATCAAGTCAAACTCTTGTTGTTAAAGATCAAAATAAAGGAAAGAATGTTGTGCAAGAAGATCAACCACAACCTTCCAAGAATG
TTGTGCAACAAGATCAACCACCATCATCCACTTCAATCGCTGAATTATTTGTCCAACAACTTCAGGACATGATAACAAACTCCATTAGAGCGCAATATGGTGGGGTTTCT
CAAAGTTCCCTCTTGTATTCCAAACCATATACTAAGAGGATCGATAATTTGAGAATGCCAACCGGATATCATCCACCAAAATTCCAACAATTCGATGGAAAAGGCAACCG
CAAGCAACATGTTGCACATTTCATCGAGACATGTGAAAATGTTGGCACGCGAGGAGATCTACTAGCCAAGCAGTTCGTACGAACATTAAAAGGAAATGCTTTTGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAAACAAACACTATGGAAGAAAGAATGGCGAAGATGCAGGAAAAAGTCAACGACTTAATGAAAGCGATTGAAGAAAGAGATTCTCAAATTGCATATTTAAAGAG
TCAAAGTGAGAATCAAGATGTCGTTGAATCAAGTCAAACTCTTGTTGTTAAAGATCAAAATAAAGGAAAGAATGTTGTGCAAGAAGATCAACCACAACCTTCCAAGAATG
TTGTGCAACAAGATCAACCACCATCATCCACTTCAATCGCTGAATTATTTGTCCAACAACTTCAGGACATGATAACAAACTCCATTAGAGCGCAATATGGTGGGGTTTCT
CAAAGTTCCCTCTTGTATTCCAAACCATATACTAAGAGGATCGATAATTTGAGAATGCCAACCGGATATCATCCACCAAAATTCCAACAATTCGATGGAAAAGGCAACCG
CAAGCAACATGTTGCACATTTCATCGAGACATGTGAAAATGTTGGCACGCGAGGAGATCTACTAGCCAAGCAGTTCGTACGAACATTAAAAGGAAATGCTTTTGACTAG
Protein sequenceShow/hide protein sequence
MTETNTMEERMAKMQEKVNDLMKAIEERDSQIAYLKSQSENQDVVESSQTLVVKDQNKGKNVVQEDQPQPSKNVVQQDQPPSSTSIAELFVQQLQDMITNSIRAQYGGVS
QSSLLYSKPYTKRIDNLRMPTGYHPPKFQQFDGKGNRKQHVAHFIETCENVGTRGDLLAKQFVRTLKGNAFD