CuGenDBv2

Gene ID	Tan0003917
Organism	Trichosanthes anguina (Snake gourd v1)
Description	mediator of RNA polymerase II transcription subunit 30
Genome location	LG09:73506596..73507971
RNA-Seq Expression	Tan0003917
Synteny	Tan0003917
Gene Ontology terms	GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034568 - Mediator of RNA polymerase II transcription subunit 30

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004138044.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]

7.4e-90

93.94

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Query:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK+TNVLALPQTTQELAMEG KHLEETIESAFQILYSMNDELCNPTLWST  STATTATS L IASP+GPSSHSANGVVNGDASSESTSHHTD+S GG
Subjt:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYE+G S HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_008464424.1 PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]

2.5e-90

94.44

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Query:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK+T VLALPQTTQELAMEG KHLEETIESAFQILYSMNDELCNPTLWST  STATTATS L IASPNGPSSHSANGVVNGDASSESTSHHTD+SSGG
Subjt:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYE+G S+HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_022134927.1 mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]

3.0e-83

86.8

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Query:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTISTATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGG
        ME+K T++LALPQTTQELA+EG KHLEETIESAFQILYSMNDELCNPTLWST  T++TATSAL+IASPNGPS HS NGVVNGDASSEST+HH DTSSGGG
Subjt:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTISTATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGG

Query:  SGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        +GSGGALEEARVRY NSVLALRAILAAIP+SQ AKAYE+G S HASPADQSEIDKLEQHL NLRKELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Subjt:  SGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_022921424.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata]

2.0e-87

91.41

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Query:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK TNVL+LPQTTQELAMEG KHLEETIESAFQILYSMNDELCNPTLWST  STATT TS L IASPN PSSHS NGVVNGDASSEST+HHTDTSSGG
Subjt:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+E+G S HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_038879540.1 mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]

3.8e-86

92.42

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Query:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK TNVLALPQTTQELAMEG KHLEETIESAFQILYSMNDELCNPTLWST  ST TTATS LAIASPNGPSSHS NGVVNGDASSESTSHHTD+SSGG
Subjt:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKA AYE+G S   SPADQSEIDKLEQHLS+LRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNW4 Uncharacterized protein

3.6e-90

93.94

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Query:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK+TNVLALPQTTQELAMEG KHLEETIESAFQILYSMNDELCNPTLWST  STATTATS L IASP+GPSSHSANGVVNGDASSESTSHHTD+S GG
Subjt:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYE+G S HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A1S3CMZ7 mediator of RNA polymerase II transcription subunit 30

1.2e-90

94.44

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Query:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK+T VLALPQTTQELAMEG KHLEETIESAFQILYSMNDELCNPTLWST  STATTATS L IASPNGPSSHSANGVVNGDASSESTSHHTD+SSGG
Subjt:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYE+G S+HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A5A7USU3 Mediator of RNA polymerase II transcription subunit 30

1.2e-90

94.44

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Query:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK+T VLALPQTTQELAMEG KHLEETIESAFQILYSMNDELCNPTLWST  STATTATS L IASPNGPSSHSANGVVNGDASSESTSHHTD+SSGG
Subjt:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYE+G S+HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A6J1E0F5 mediator of RNA polymerase II transcription subunit 30

9.7e-88

91.41

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Query:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK TNVL+LPQTTQELAMEG KHLEETIESAFQILYSMNDELCNPTLWST  STATT TS L IASPN PSSHS NGVVNGDASSEST+HHTDTSSGG
Subjt:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+E+G S HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A6J1JFZ2 mediator of RNA polymerase II transcription subunit 30

9.7e-88

91.41

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Query:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK TNVL+LPQTTQELAMEG KHLEETIESAFQILYSMNDELCNPTLWST  STATT TS L IASPN PSSHS NGVVNGDASSEST+HHTDTSSGG
Subjt:  MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTI-STATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+E+G S HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

SwissProt top hits

e value

%identity

Alignment

Q9FMV4 Mediator of RNA polymerase II transcription subunit 30

1.1e-43

56.45

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Query:  TTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTISTATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGG--ALEEAR
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LW   ST+ T +SA      NG +  SA+      A+ + TSHH++++ GGG G  G   L+EA 
Subjt:  TTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTISTATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGG--ALEEAR

Query:  VRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        +RYKNSV +LRA+LAAIPNSQKAKA E   +   SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  VRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Arabidopsis top hits

e value

%identity

Alignment

AT5G63480.1 unknown protein

7.7e-45

56.45

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Query:  TTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTISTATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGG--ALEEAR
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LW   ST+ T +SA      NG +  SA+      A+ + TSHH++++ GGG G  G   L+EA 
Subjt:  TTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTISTATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGG--ALEEAR

Query:  VRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        +RYKNSV +LRA+LAAIPNSQKAKA E   +   SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  VRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Sequences

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CDS sequence

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ATGGAAGAGAAAACCACTAATGTTTTGGCACTTCCCCAGACCACTCAAGAGCTTGCAATGGAGGGCACCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCT
CTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCATTTCAACGGCAACAACGGCTACTTCTGCTTTAGCAATTGCCAGCCCAAATGGTCCATCTTCGC
ATTCCGCTAATGGAGTTGTAAATGGCGACGCAAGTTCCGAAAGCACTAGCCATCACACAGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAAGAGGCC
CGTGTTCGCTACAAGAATTCAGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCTAAAGCATATGAAACGGGTGCGAGTAGTCATGCATCGCC
AGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTCAAGAACTTGCATATCAAGCTTCTGATAGATCAACTACGAGATC
TTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGA

mRNA sequence

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Protein sequence

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MEEKTTNVLALPQTTQELAMEGTKHLEETIESAFQILYSMNDELCNPTLWSTISTATTATSALAIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEA
RVRYKNSVLALRAILAAIPNSQKAKAYETGASSHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Tan0003917 (gene) of Snake gourd v1 genome