; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0003940 (gene) of Snake gourd v1 genome

Gene IDTan0003940
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationLG02:84416418..84417732
RNA-Seq ExpressionTan0003940
SyntenyTan0003940
Gene Ontology termsGO:0009416 - response to light stimulus (biological process)
GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150882.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus]2.5e-12286.31Show/hide
Query:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPKH--SLQSPSRRT-VIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHC
        MAVS SAATA    L L  SSS Y+P FNP     L+SPSRRT +IA AQS+ RQTWLPGLDPPPHLDG+LAGDFGFDPLGL EDP SLKWYVQAELVHC
Subjt:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPKH--SLQSPSRRT-VIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHC

Query:  RFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGLA
        RFAMLGVSG+LLTDLLRVTGIS+LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE+AF+GLEPGYPGGPLLNPLG+A
Subjt:  RFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGLA

Query:  KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP
        KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNL+EHLSNPWHKTI+QTLS+SSP
Subjt:  KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP

XP_022951251.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moschata]2.3e-12388.46Show/hide
Query:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA--QSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHC
        MAVSLSAAT+      L  SSSFYS S +PK H L+SPSRRTV AQA  QSQPRQTWLPGLDPPPHLDG+LAGDFGFDPLGL EDPHSLKW+VQAELVH 
Subjt:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA--QSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHC

Query:  RFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGLA
        RFAMLGVSGILLTDLLRVTGIS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLESAFEGLEPGYPGGPLLNPLGLA
Subjt:  RFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGLA

Query:  KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSN
        KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNL+EHLSNPWH T++ TLS+
Subjt:  KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSN

XP_023001834.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima]6.7e-12387.83Show/hide
Query:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA--QSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHC
        MAVSLSAAT       L  SSS YS S + K H L+SPSRRTV AQA  QSQPRQTWLPGLDPPPHLDG+LAGDFGFDPLGL EDPHSLKW+VQAELVH 
Subjt:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA--QSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHC

Query:  RFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGLA
        RFAMLGVSGILLTDLLRVTGIS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLESAFEGLEPGYPGGPLLNPLGLA
Subjt:  RFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGLA

Query:  KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP
        KDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNL+EHLSNPWH TI+ TLS+SSP
Subjt:  KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP

XP_023536986.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic-like [Cucurbita pepo subsp. pepo]2.3e-12388.17Show/hide
Query:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA----QSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELV
        MAVSLSAAT+      L  SSSFYS S +PK H L+SPSRRTVIAQA    QSQPRQTWLPGLDPPPHLDG+LAGDFGFDPLGL EDPHSLKW+VQAELV
Subjt:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA----QSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELV

Query:  HCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLG
        H RFAMLGVSGILLTDLLRVTGIS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLESAFEGLEPGYPGGPLLNPLG
Subjt:  HCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLG

Query:  LAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSN
        LAKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNL+EHLSNPWH TI+ TLS+
Subjt:  LAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSN

XP_038886221.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispida]1.4e-12588.93Show/hide
Query:  MAVSLSAATAR--AFYLRLSSSSSFYSPSFNPKHS--LQSPSRRT-VIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELV
        MAVS+SAATAR  AF+L+ SSSSS Y+PSFNP  S  L+SPSRRT +IAQAQS+ RQTWLPGLDPPPHLDG+LAGDFGFDPLGL EDPHSLKWYVQAELV
Subjt:  MAVSLSAATAR--AFYLRLSSSSSFYSPSFNPKHS--LQSPSRRT-VIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELV

Query:  HCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLG
        H RFAMLGVSGILLTDLLRVTGIS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE+AFEGLEPGYPGGPLLNPLG
Subjt:  HCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLG

Query:  LAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSN
        +AKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNL+EHLSNPWHKTI+QTLS+
Subjt:  LAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSN

TrEMBL top hitse value%identityAlignment
A0A0A0LRB4 Chlorophyll a-b binding protein, chloroplastic1.2e-12286.31Show/hide
Query:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPKH--SLQSPSRRT-VIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHC
        MAVS SAATA    L L  SSS Y+P FNP     L+SPSRRT +IA AQS+ RQTWLPGLDPPPHLDG+LAGDFGFDPLGL EDP SLKWYVQAELVHC
Subjt:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPKH--SLQSPSRRT-VIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHC

Query:  RFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGLA
        RFAMLGVSG+LLTDLLRVTGIS+LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE+AF+GLEPGYPGGPLLNPLG+A
Subjt:  RFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGLA

Query:  KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP
        KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNL+EHLSNPWHKTI+QTLS+SSP
Subjt:  KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP

A0A5A7UY53 Chlorophyll a-b binding protein, chloroplastic6.3e-11983.71Show/hide
Query:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPKHS---LQSPSRRT-VIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVH
        MAVS+SAAT   F+L  SSSS  ++P FNP +    L+SPSR + +IA AQS+ RQTWLPGLDPPP+LDG+L GDFGFDPLGL EDP SLKWYVQAELVH
Subjt:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPKHS---LQSPSRRT-VIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVH

Query:  CRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGL
        CRFAMLGV+G+LLTDLLRVTGIS+LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE+AFEGLEPGYPGGPLLNPLG+
Subjt:  CRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGL

Query:  AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP
        AKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNL+EHLSNPWHKTI+QTLS+SSP
Subjt:  AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP

A0A6J1CSJ3 Chlorophyll a-b binding protein, chloroplastic2.2e-11982.05Show/hide
Query:  MAV-SLSAATARAFYLRLSSSS--------SFYSPSFNPK---HS-LQSPSRRTVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLK
        MAV SLSAAT  A  +R  SSS        +F+SPSF P+   HS   S SRRT++A+AQ+QPR+TWLPGLDPPPHLDGSLAGDFGFDPLGLAEDP SLK
Subjt:  MAV-SLSAATARAFYLRLSSSS--------SFYSPSFNPK---HS-LQSPSRRTVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLK

Query:  WYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPG
        WYVQAEL+H RFAMLG+SGILLTDLLRVTG+SK+PVWY AGA EYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE+A EGLEPGYPG
Subjt:  WYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPG

Query:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP
        GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAM+GIFVQAYVT  GPIDNL+EHLSNPWHKTI+QTLS+SSP
Subjt:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP

A0A6J1GH16 Chlorophyll a-b binding protein, chloroplastic1.1e-12388.46Show/hide
Query:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA--QSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHC
        MAVSLSAAT+      L  SSSFYS S +PK H L+SPSRRTV AQA  QSQPRQTWLPGLDPPPHLDG+LAGDFGFDPLGL EDPHSLKW+VQAELVH 
Subjt:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA--QSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHC

Query:  RFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGLA
        RFAMLGVSGILLTDLLRVTGIS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLESAFEGLEPGYPGGPLLNPLGLA
Subjt:  RFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGLA

Query:  KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSN
        KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNL+EHLSNPWH T++ TLS+
Subjt:  KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSN

A0A6J1KNS0 Chlorophyll a-b binding protein, chloroplastic3.2e-12387.83Show/hide
Query:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA--QSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHC
        MAVSLSAAT       L  SSS YS S + K H L+SPSRRTV AQA  QSQPRQTWLPGLDPPPHLDG+LAGDFGFDPLGL EDPHSLKW+VQAELVH 
Subjt:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA--QSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHC

Query:  RFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGLA
        RFAMLGVSGILLTDLLRVTGIS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLESAFEGLEPGYPGGPLLNPLGLA
Subjt:  RFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESAFEGLEPGYPGGPLLNPLGLA

Query:  KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP
        KDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNL+EHLSNPWH TI+ TLS+SSP
Subjt:  KDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP

SwissProt top hitse value%identityAlignment
P10708 Chlorophyll a-b binding protein 7, chloroplastic3.8e-5249.54Show/hide
Query:  TVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETL
        T +  A    R  W PG  PPP LDGSL GDFGFDPLGLA DP SL+W  QAELVHCR+AMLG +GI + +LL   GI   P WY AG  EY F +  TL
Subjt:  TVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETL

Query:  FIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLL
        FIV+L+L+G+ E +R+ D   PG       F   +   G + GYPGG   +PLG          + + KEIKNGRLAM+A++G + Q   T TGPIDNL 
Subjt:  FIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLL

Query:  EHLSNPWHKTIVQTLS
         HL++P H TI    S
Subjt:  EHLSNPWHKTIVQTLS

P27521 Chlorophyll a-b binding protein 4, chloroplastic2.3e-5454.46Show/hide
Query:  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVET
        WLPGL  P +L GSLAGD GFDPLGLAEDP +LKW+VQAELV+ R+AMLGV+G+LL ++    GI  +P WY+AG  +Y FA+  TLF+++ +L  +VE 
Subjt:  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVET

Query:  KRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQT
        +R+ D K+PGS  Q   F   S  +G E GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  GP +NLL+HLS+PWH TIVQT
Subjt:  KRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQT

Query:  LS
         +
Subjt:  LS

Q9C639 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic3.8e-9779.52Show/hide
Query:  RQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGF
        R TWLPGL+PPP+LDG+LAGD+GFDPLGL EDP SLKWYVQAELVH RFAMLGV+GIL TDLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF
Subjt:  RQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGF

Query:  VETKRYMDFKSPGSQAQ--GTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHK
         ETKRYMDF SPGSQA+    FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AMLG FVQA VT TGPIDNL+EHLSNPWHK
Subjt:  VETKRYMDFKSPGSQAQ--GTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHK

Query:  TIVQTLSNSS
        TI+QTL  S+
Subjt:  TIVQTLSNSS

Q9SQL2 Chlorophyll a-b binding protein P4, chloroplastic5.2e-5453.92Show/hide
Query:  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVET
        WLPGL  P +L GSL GD GFDPLGLAEDP +L+W+VQAELV+ R+AMLGV+G+LL ++    GI  +P WY AG  EY FA+  TLF+++ +L  +VE 
Subjt:  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVET

Query:  KRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQT
        +R+ D K+PGS  Q   F   S   G E GYPGG + NPL  A  +    + K KEI NGRLAM+A LG  +Q  VT  GP DNLL+H+S+PWH TIVQT
Subjt:  KRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQT

Query:  LSNS
        L  +
Subjt:  LSNS

Q9SYW8 Photosystem I chlorophyll a/b-binding protein 2, chloroplastic5.4e-5146.67Show/hide
Query:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPKHSLQSPS----RRTVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVH
        MA SL A++A A    +SS S         K  L  P+      +V A A    R  W PG  PP  LDGSL GDFGFDPLGL+ DP SLKW VQAE+VH
Subjt:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPKHSLQSPS----RRTVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVH

Query:  CRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLA
        CR+AMLG +GI + + L   GI   P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PGS      F   +   G + GYPGG   +PLG  
Subjt:  CRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLA

Query:  K-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTI
                + + KEIKNGRLAM+A++G + Q   T TGPIDNL  HL++P H TI
Subjt:  K-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTI

Arabidopsis top hitse value%identityAlignment
AT1G45474.1 photosystem I light harvesting complex gene 52.7e-9879.52Show/hide
Query:  RQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGF
        R TWLPGL+PPP+LDG+LAGD+GFDPLGL EDP SLKWYVQAELVH RFAMLGV+GIL TDLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF
Subjt:  RQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGF

Query:  VETKRYMDFKSPGSQAQ--GTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHK
         ETKRYMDF SPGSQA+    FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AMLG FVQA VT TGPIDNL+EHLSNPWHK
Subjt:  VETKRYMDFKSPGSQAQ--GTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHK

Query:  TIVQTLSNSS
        TI+QTL  S+
Subjt:  TIVQTLSNSS

AT1G45474.2 photosystem I light harvesting complex gene 52.7e-9879.52Show/hide
Query:  RQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGF
        R TWLPGL+PPP+LDG+LAGD+GFDPLGL EDP SLKWYVQAELVH RFAMLGV+GIL TDLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF
Subjt:  RQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGF

Query:  VETKRYMDFKSPGSQAQ--GTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHK
         ETKRYMDF SPGSQA+    FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AMLG FVQA VT TGPIDNL+EHLSNPWHK
Subjt:  VETKRYMDFKSPGSQAQ--GTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHK

Query:  TIVQTLSNSS
        TI+QTL  S+
Subjt:  TIVQTLSNSS

AT1G61520.1 photosystem I light harvesting complex gene 37.3e-4338.52Show/hide
Query:  AVSLSAATAR-AFYLRLSSSSSFYSPSFNPKHSLQSPSRRTVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSL------KWYVQAEL
        +++ S  TAR  F  +  +S+S    SF  K +   P +       Q   R  W        +LDGSL GD+GFDPLGL+ DP         +W    E+
Subjt:  AVSLSAATAR-AFYLRLSSSSSFYSPSFNPKHSLQSPSRRTVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSL------KWYVQAEL

Query:  VHCRFAMLGVSGILLTDLLRVTGI----SKLPVWYNAGAVEYG-----FANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGLESAFEGL-EPGY
        ++ RFAMLG +G +  ++L   G+    + LP W+  G +        +A+  TLF++++ LMGF E +R  D+ +PGS  +  F GLE    G   P Y
Subjt:  VHCRFAMLGVSGILLTDLLRVTGI----SKLPVWYNAGAVEYG-----FANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGLESAFEGL-EPGY

Query:  PGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTL
        PGGP  NPLG  KD K+  + KLKE+KNGRLAM+A+LG F+Q  VT  GP  NLL+HL++P +  ++ +L
Subjt:  PGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTL

AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A41.7e-5554.46Show/hide
Query:  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVET
        WLPGL  P +L GSLAGD GFDPLGLAEDP +LKW+VQAELV+ R+AMLGV+G+LL ++    GI  +P WY+AG  +Y FA+  TLF+++ +L  +VE 
Subjt:  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVET

Query:  KRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQT
        +R+ D K+PGS  Q   F   S  +G E GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  GP +NLL+HLS+PWH TIVQT
Subjt:  KRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQT

Query:  LS
         +
Subjt:  LS

AT3G61470.1 photosystem I light harvesting complex gene 23.8e-5246.67Show/hide
Query:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPKHSLQSPS----RRTVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVH
        MA SL A++A A    +SS S         K  L  P+      +V A A    R  W PG  PP  LDGSL GDFGFDPLGL+ DP SLKW VQAE+VH
Subjt:  MAVSLSAATARAFYLRLSSSSSFYSPSFNPKHSLQSPS----RRTVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVH

Query:  CRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLA
        CR+AMLG +GI + + L   GI   P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PGS      F   +   G + GYPGG   +PLG  
Subjt:  CRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLA

Query:  K-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTI
                + + KEIKNGRLAM+A++G + Q   T TGPIDNL  HL++P H TI
Subjt:  K-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTTCACTTTCAGCAGCCACTGCCAGAGCCTTCTATCTGCGGCTCTCATCTTCATCTTCATTTTACAGTCCCTCATTCAACCCTAAACACTCCCTCCAATCACC
CTCCCGCCGCACAGTAATAGCTCAAGCCCAATCTCAGCCTCGCCAAACATGGCTCCCCGGCCTCGACCCTCCGCCGCATCTCGACGGAAGCCTCGCCGGAGATTTTGGAT
TCGATCCACTTGGGCTCGCCGAAGACCCACATAGCTTGAAGTGGTACGTCCAAGCAGAGCTCGTTCATTGTCGCTTCGCCATGCTTGGGGTCTCTGGAATTCTTCTCACA
GATTTGCTTCGTGTAACAGGAATCAGTAAATTACCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAAGAAACCCTCTTCATTGTTCAGCTGCTGTT
GATGGGGTTTGTGGAAACCAAAAGATATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGGAACTTTCTTTGGATTAGAATCCGCTTTCGAAGGTCTCGAGCCCGGAT
ACCCTGGGGGTCCTCTGCTGAATCCTCTTGGCTTGGCTAAAGATATCAAGAATGCCCATGACTGGAAGCTCAAGGAGATTAAGAATGGGCGGCTTGCAATGGTAGCCATG
CTGGGGATCTTTGTGCAAGCCTATGTGACACAAACAGGACCAATAGATAACCTTCTGGAGCACCTTTCAAATCCATGGCACAAGACTATTGTCCAGACCCTCTCGAACTC
AAGTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTTTCACTTTCAGCAGCCACTGCCAGAGCCTTCTATCTGCGGCTCTCATCTTCATCTTCATTTTACAGTCCCTCATTCAACCCTAAACACTCCCTCCAATCACC
CTCCCGCCGCACAGTAATAGCTCAAGCCCAATCTCAGCCTCGCCAAACATGGCTCCCCGGCCTCGACCCTCCGCCGCATCTCGACGGAAGCCTCGCCGGAGATTTTGGAT
TCGATCCACTTGGGCTCGCCGAAGACCCACATAGCTTGAAGTGGTACGTCCAAGCAGAGCTCGTTCATTGTCGCTTCGCCATGCTTGGGGTCTCTGGAATTCTTCTCACA
GATTTGCTTCGTGTAACAGGAATCAGTAAATTACCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAAGAAACCCTCTTCATTGTTCAGCTGCTGTT
GATGGGGTTTGTGGAAACCAAAAGATATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGGAACTTTCTTTGGATTAGAATCCGCTTTCGAAGGTCTCGAGCCCGGAT
ACCCTGGGGGTCCTCTGCTGAATCCTCTTGGCTTGGCTAAAGATATCAAGAATGCCCATGACTGGAAGCTCAAGGAGATTAAGAATGGGCGGCTTGCAATGGTAGCCATG
CTGGGGATCTTTGTGCAAGCCTATGTGACACAAACAGGACCAATAGATAACCTTCTGGAGCACCTTTCAAATCCATGGCACAAGACTATTGTCCAGACCCTCTCGAACTC
AAGTCCTTGA
Protein sequenceShow/hide protein sequence
MAVSLSAATARAFYLRLSSSSSFYSPSFNPKHSLQSPSRRTVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLT
DLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAM
LGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP