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Tan0003964 (gene) of Snake gourd v1 genome

Gene IDTan0003964
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein RADIALIS-like 1
Genome locationLG02:7984098..7984292
RNA-Seq ExpressionTan0003964
SyntenyTan0003964
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572041.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]2.8e-2287.5Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        MASMSSRGS+AWT MQNKAFEKALAVYDQDTPERWLNV+K VGEKTEEEVK+HYQLL+ DVK+I
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

XP_022136148.1 protein RADIALIS-like 1 [Momordica charantia]3.3e-2390.62Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        MASMSSRGS AWTAMQNKAFE+ALAVYDQDTPERWLNV+K VGEKTEEEVK+HYQLLVEDVK+I
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

XP_022952273.1 protein RADIALIS-like 1 [Cucurbita moschata]2.8e-2287.5Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        MASMSSRGS+AWT MQNKAFEKALAVYDQDTPERWLNV+K VGEKTEEEVK+HYQLL+ DVK+I
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

XP_022972527.1 protein RADIALIS-like 1 [Cucurbita maxima]9.6e-2387.5Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        MASMSSRGS+AWT MQNKAFEKALAVYDQDTPERWLNV+K+VGEKTEEEVK+HYQLL+ DVK+I
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

XP_038888638.1 protein RADIALIS-like 1 [Benincasa hispida]4.8e-2285.94Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        MASMSS GS+AWTAMQNK FEKALAVYDQDTPERWLNV+K VGEKTEEEVK+HYQLL++DVK+I
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

TrEMBL top hitse value%identityAlignment
A0A6J1C385 protein RADIALIS-like 15.7e-2184.38Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        MASMSS GS AWTA QNKAFEKALAVYDQDTPERWLNV+K VG KT EEVK+HY+LLVEDVK+I
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

A0A6J1C4I7 protein RADIALIS-like 12.0e-2181.25Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        MASMS+ GS +WTAMQNKAFE+ALAVYD+DTP+RWLNV+K +GEKTEEEVK+HYQLLVEDVK+I
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

A0A6J1C6U4 protein RADIALIS-like 11.6e-2390.62Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        MASMSSRGS AWTAMQNKAFE+ALAVYDQDTPERWLNV+K VGEKTEEEVK+HYQLLVEDVK+I
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

A0A6J1GK35 protein RADIALIS-like 11.4e-2287.5Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        MASMSSRGS+AWT MQNKAFEKALAVYDQDTPERWLNV+K VGEKTEEEVK+HYQLL+ DVK+I
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

A0A6J1I517 protein RADIALIS-like 14.7e-2387.5Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        MASMSSRGS+AWT MQNKAFEKALAVYDQDTPERWLNV+K+VGEKTEEEVK+HYQLL+ DVK+I
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.3e-1868.25Show/hide
Query:  ASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        +SMSS+ S +WTA QNKAFE+ALA YDQDTP RW NV+K+VG KT EEVK+HY+LLV+D+  I
Subjt:  ASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

Q1A173 Protein RADIALIS-like 61.7e-1463.93Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDV
        MAS S      WT  QNK FE+ALAVYD+DTP+RW NV+K VG KT EEVK+HY +LVED+
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDV

Q58FS3 Transcription factor RADIALIS5.3e-1665.57Show/hide
Query:  SSRGSD-AWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        S+RGS   W+A +NKAFE+ALAVYD+DTP+RW NV++ V  +T EEVKKHY++LVED+KYI
Subjt:  SSRGSD-AWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

Q8GW75 Protein RADIALIS-like 55.3e-1662.5Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        MAS S   S +WT+ QNK FE+ALAVYD+DTP+RW NV+K VG K+ EEVK+HY +LVED+  I
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

Q9SIJ5 Protein RADIALIS-like 24.1e-1666.13Show/hide
Query:  SMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        SMSS GS +WT  QNKAFE+ALAVYDQDTP+RW NV++ VG KT EE K+ Y LLV D++ I
Subjt:  SMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.8e-1762.5Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        MAS S   S +WT+ QNK FE+ALAVYD+DTP+RW NV+K VG K+ EEVK+HY +LVED+  I
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

AT1G75250.1 RAD-like 61.2e-1563.93Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDV
        MAS S      WT  QNK FE+ALAVYD+DTP+RW NV+K VG KT EEVK+HY +LVED+
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDV

AT1G75250.2 RAD-like 61.2e-1563.93Show/hide
Query:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDV
        MAS S      WT  QNK FE+ALAVYD+DTP+RW NV+K VG KT EEVK+HY +LVED+
Subjt:  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDV

AT2G21650.1 Homeodomain-like superfamily protein2.9e-1766.13Show/hide
Query:  SMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        SMSS GS +WT  QNKAFE+ALAVYDQDTP+RW NV++ VG KT EE K+ Y LLV D++ I
Subjt:  SMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

AT4G39250.1 RAD-like 12.4e-1968.25Show/hide
Query:  ASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI
        +SMSS+ S +WTA QNKAFE+ALA YDQDTP RW NV+K+VG KT EEVK+HY+LLV+D+  I
Subjt:  ASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCATCTCGTGGATCAGATGCATGGACTGCAATGCAAAACAAGGCGTTTGAGAAGGCTTTAGCAGTGTATGATCAAGACACACCTGAGAGATGGTTGAA
TGTTTCAAAGATTGTTGGTGAGAAAACTGAAGAGGAAGTCAAGAAGCACTATCAACTTCTTGTGGAGGATGTCAAATATATATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCATCTCGTGGATCAGATGCATGGACTGCAATGCAAAACAAGGCGTTTGAGAAGGCTTTAGCAGTGTATGATCAAGACACACCTGAGAGATGGTTGAA
TGTTTCAAAGATTGTTGGTGAGAAAACTGAAGAGGAAGTCAAGAAGCACTATCAACTTCTTGTGGAGGATGTCAAATATATATAG
Protein sequenceShow/hide protein sequence
MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI