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Tan0003978 (gene) of Snake gourd v1 genome

Gene IDTan0003978
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGirdin-like
Genome locationLG08:12633416..12634167
RNA-Seq ExpressionTan0003978
SyntenyTan0003978
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036933.1 uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]2.7e-0627.46Show/hide
Query:  MWFEQFVPVIH-----DSGDFD---FGYELESSGQ---------------KEKRFLNKN--IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDL
        +W +QF+P  H     D G ++    GYE   + +               KE  F   N  I+  I L+++N+L  + NEKL +E +QW   A   + +L
Subjt:  MWFEQFVPVIH-----DSGDFD---FGYELESSGQ---------------KEKRFLNKN--IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDL

Query:  VETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQASKILTDHDQWKWKY
         +T+  LKNQ +LE + + LD E R++++  R MKN+K  LQ  +    ++ E  E    L+     L +++  +Q  + +I  +++     Y
Subjt:  VETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQASKILTDHDQWKWKY

KAA0036941.1 girdin-like [Cucumis melo var. makuwa]1.2e-0631.17Show/hide
Query:  DFGYELESSGQKEKRFLNKN--IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKD
        D   E+  SG KE  F   N  I+  I L+E+N+L  + NEKL +E +QW   A   + +L +T+  LKNQ +LEK+ + LD E R++++  R +KN+K 
Subjt:  DFGYELESSGQKEKRFLNKN--IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKD

Query:  ALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQASKILTDHDQWKWKY
         LQ  +    ++ E  E    L+    +L +++  +Q  + +I  +++     Y
Subjt:  ALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQASKILTDHDQWKWKY

KAA0036949.1 girdin-like [Cucumis melo var. makuwa]1.2e-0930.81Show/hide
Query:  MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL-----------NKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLE
        +W +QF+P  H+  + DF Y+ E    K+   +           N+ I+  I L+E+N+L  + NEKL +E +QW   A   +  L +T+  LKNQ +LE
Subjt:  MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL-----------NKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLE

Query:  KEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENN--------GALRTTIANLEHRIQKIQEQ
        K+ + LD E R++++  R +KN+K   Q  +  +D+ I+  EN           L T+I   E +I  ++ Q
Subjt:  KEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENN--------GALRTTIANLEHRIQKIQEQ

KAA0066094.1 girdin-like [Cucumis melo var. makuwa]4.1e-0725.82Show/hide
Query:  MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL----------------------------------------------------NKNIDGHILLKEENQ
        +W +QF+P  H+  +FDF Y+ E    K+++ +                                                    N+ I+  I L+E+N+
Subjt:  MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL----------------------------------------------------NKNIDGHILLKEENQ

Query:  LFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENN--------GALRTTI
        L  + NEKL +E +QW   A   + +L +T+  LKNQ +LEK+ + LD E R++++  R +KN+K  LQ  +  +D+ I+  EN           L T+I
Subjt:  LFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENN--------GALRTTI

Query:  ANLEHRIQKIQEQ
           E +I  ++ Q
Subjt:  ANLEHRIQKIQEQ

TYK23632.1 girdin-like [Cucumis melo var. makuwa]5.4e-0733.09Show/hide
Query:  ESSGQKEKRFLNKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKE
        E+S ++  +++ K+I+    L+E+N+L  + NEKL +E +QW   A   + +L +T+  LKNQ +LEK+ + LD E R++++  RR+KN+K  LQ  +  
Subjt:  ESSGQKEKRFLNKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKE

Query:  KDQVIESEENN--------GALRTTIANLEHRIQKIQEQ
        +D+ I+  EN           L T+I   E +I  ++ Q
Subjt:  KDQVIESEENN--------GALRTTIANLEHRIQKIQEQ

TrEMBL top hitse value%identityAlignment
A0A5A7T1W2 Retrotrans_gag domain-containing protein1.3e-0627.46Show/hide
Query:  MWFEQFVPVIH-----DSGDFD---FGYELESSGQ---------------KEKRFLNKN--IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDL
        +W +QF+P  H     D G ++    GYE   + +               KE  F   N  I+  I L+++N+L  + NEKL +E +QW   A   + +L
Subjt:  MWFEQFVPVIH-----DSGDFD---FGYELESSGQ---------------KEKRFLNKN--IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDL

Query:  VETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQASKILTDHDQWKWKY
         +T+  LKNQ +LE + + LD E R++++  R MKN+K  LQ  +    ++ E  E    L+     L +++  +Q  + +I  +++     Y
Subjt:  VETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQASKILTDHDQWKWKY

A0A5A7T5S7 Girdin-like5.8e-0731.17Show/hide
Query:  DFGYELESSGQKEKRFLNKN--IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKD
        D   E+  SG KE  F   N  I+  I L+E+N+L  + NEKL +E +QW   A   + +L +T+  LKNQ +LEK+ + LD E R++++  R +KN+K 
Subjt:  DFGYELESSGQKEKRFLNKN--IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKD

Query:  ALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQASKILTDHDQWKWKY
         LQ  +    ++ E  E    L+    +L +++  +Q  + +I  +++     Y
Subjt:  ALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQASKILTDHDQWKWKY

A0A5A7T6E2 Girdin-like5.6e-1030.81Show/hide
Query:  MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL-----------NKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLE
        +W +QF+P  H+  + DF Y+ E    K+   +           N+ I+  I L+E+N+L  + NEKL +E +QW   A   +  L +T+  LKNQ +LE
Subjt:  MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL-----------NKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLE

Query:  KEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENN--------GALRTTIANLEHRIQKIQEQ
        K+ + LD E R++++  R +KN+K   Q  +  +D+ I+  EN           L T+I   E +I  ++ Q
Subjt:  KEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENN--------GALRTTIANLEHRIQKIQEQ

A0A5A7VFL0 Girdin-like2.0e-0725.82Show/hide
Query:  MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL----------------------------------------------------NKNIDGHILLKEENQ
        +W +QF+P  H+  +FDF Y+ E    K+++ +                                                    N+ I+  I L+E+N+
Subjt:  MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL----------------------------------------------------NKNIDGHILLKEENQ

Query:  LFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENN--------GALRTTI
        L  + NEKL +E +QW   A   + +L +T+  LKNQ +LEK+ + LD E R++++  R +KN+K  LQ  +  +D+ I+  EN           L T+I
Subjt:  LFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENN--------GALRTTI

Query:  ANLEHRIQKIQEQ
           E +I  ++ Q
Subjt:  ANLEHRIQKIQEQ

A0A5D3DJ95 Girdin-like2.6e-0733.09Show/hide
Query:  ESSGQKEKRFLNKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKE
        E+S ++  +++ K+I+    L+E+N+L  + NEKL +E +QW   A   + +L +T+  LKNQ +LEK+ + LD E R++++  RR+KN+K  LQ  +  
Subjt:  ESSGQKEKRFLNKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKE

Query:  KDQVIESEENN--------GALRTTIANLEHRIQKIQEQ
        +D+ I+  EN           L T+I   E +I  ++ Q
Subjt:  KDQVIESEENN--------GALRTTIANLEHRIQKIQEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTTTGAACAGTTTGTTCCAGTAATACATGACTCAGGAGATTTCGACTTCGGATATGAACTAGAGAGTTCTGGACAAAAGGAAAAAAGGTTTCTAAACAAGAATAT
AGACGGACATATCCTTTTGAAAGAGGAAAATCAATTGTTCCATCGACATAATGAGAAGTTACTGCAAGAGATAACTCAATGGAAGCAGCAAGCTGTAGAGACAAAAAGAG
ATCTGGTCGAAACAAGGAGACTATTGAAGAACCAAGTTAGGCTTGAGAAAGAAGGTCAAGAATTGGACTCTGAAAACAGGCAACTAGACGAAAAAGTTAGAAGGATGAAG
AATGATAAAGATGCATTACAAAGGATTTTGAAAGAGAAGGACCAAGTCATTGAGTCTGAAGAAAACAATGGTGCTTTACGCACGACAATCGCAAATCTAGAGCATCGGAT
TCAGAAAATTCAAGAACAAGCATCGAAGATACTCACCGATCATGATCAGTGGAAGTGGAAATATGGAGCGCTATTGAGTAATCAAGCCAATATATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGTTTGAACAGTTTGTTCCAGTAATACATGACTCAGGAGATTTCGACTTCGGATATGAACTAGAGAGTTCTGGACAAAAGGAAAAAAGGTTTCTAAACAAGAATAT
AGACGGACATATCCTTTTGAAAGAGGAAAATCAATTGTTCCATCGACATAATGAGAAGTTACTGCAAGAGATAACTCAATGGAAGCAGCAAGCTGTAGAGACAAAAAGAG
ATCTGGTCGAAACAAGGAGACTATTGAAGAACCAAGTTAGGCTTGAGAAAGAAGGTCAAGAATTGGACTCTGAAAACAGGCAACTAGACGAAAAAGTTAGAAGGATGAAG
AATGATAAAGATGCATTACAAAGGATTTTGAAAGAGAAGGACCAAGTCATTGAGTCTGAAGAAAACAATGGTGCTTTACGCACGACAATCGCAAATCTAGAGCATCGGAT
TCAGAAAATTCAAGAACAAGCATCGAAGATACTCACCGATCATGATCAGTGGAAGTGGAAATATGGAGCGCTATTGAGTAATCAAGCCAATATATAA
Protein sequenceShow/hide protein sequence
MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFLNKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMK
NDKDALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQASKILTDHDQWKWKYGALLSNQANI