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Tan0004029 (gene) of Snake gourd v1 genome

Gene IDTan0004029
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationLG11:35902730..35967320
RNA-Seq ExpressionTan0004029
SyntenyTan0004029
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035809.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.2e-0596.3Show/hide
Query:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
        MDFLFGLPRTSS HDGIWVIVDRLTKT
Subjt:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
KAA0053322.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.6e-0596.43Show/hide
Query:  MDFLFGLPRTSSEHDGIWVIVDRLTKTK
        MDFLFGLPRTSS HDGIWVIVDRLTKTK
Subjt:  MDFLFGLPRTSSEHDGIWVIVDRLTKTK
KAA0056402.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.8e-0596.3Show/hide
Query:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
        MDFLFGLPRTSS HDGIWVIVDRLTKT
Subjt:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
KAA0063169.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.2e-0596.3Show/hide
Query:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
        MDFLFGLPRTSS HDGIWVIVDRLTKT
Subjt:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
TYK05214.1 reverse transcriptase [Cucumis melo var. makuwa]6.2e-0596.3Show/hide
Query:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
        MDFLFGLPRTSS HDGIWVIVDRLTKT
Subjt:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
TrEMBL top hitse value%identityAlignment
A0A5A7SSK6 DNA/RNA polymerases superfamily protein3.0e-0596.3Show/hide
Query:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
        MDFLFGLPRTSS HDGIWVIVDRLTKT
Subjt:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
A0A5A7U2V7 Reverse transcriptase3.0e-0596.3Show/hide
Query:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
        MDFLFGLPRTSS HDGIWVIVDRLTKT
Subjt:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
A0A5A7UC49 Reverse transcriptase7.9e-0696.43Show/hide
Query:  MDFLFGLPRTSSEHDGIWVIVDRLTKTK
        MDFLFGLPRTSS HDGIWVIVDRLTKTK
Subjt:  MDFLFGLPRTSSEHDGIWVIVDRLTKTK
A0A5A7UKQ4 Ty3-gypsy retrotransposon protein2.3e-0596.3Show/hide
Query:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
        MDFLFGLPRTSS HDGIWVIVDRLTKT
Subjt:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
A0A5D3BS67 Reverse transcriptase3.0e-0596.3Show/hide
Query:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
        MDFLFGLPRTSS HDGIWVIVDRLTKT
Subjt:  MDFLFGLPRTSSEHDGIWVIVDRLTKT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTTCTGTTTGGATTACCACGTACTTCAAGTGAACATGATGGTATTTGGGTAATAGTAGATAGACTCACTAAGACAAAGACGGTTTGTTTGCATTTAATTAACTC
AAGTGCAACTCATGCTTTATTAAATACAAGTCAAGCTAGATTTATGCAACAAAAGCTTCAAGCTACTTCAAGTGGGGCTTCATTAATCATGGATGATTACAAACTTGACT
TGATCAATCTTGCTTGTGGAGTGATTCGGATCTCAAGTAATTTTCTTGCCTTGAGATATTTGATCGACAAGGTTGCATGCTTAGAATCATTCAAGCTTGACTTGATCAAT
CTTACTTGTGGTGTGATTCGGATCTCATACAAGTTCTCTTGCCTTGAGATGTTTGATCGACAAGAGTTGGAAGAGAATTGTTACCACCGAGAAGGTTACAATTTGGTTAG
TGGAGATCATGGTATTGATGGGGATGTAAGTTACAACCTTTCAATTGACCATAGGTTACTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTTTCTGTTTGGATTACCACGTACTTCAAGTGAACATGATGGTATTTGGGTAATAGTAGATAGACTCACTAAGACAAAGACGGTTTGTTTGCATTTAATTAACTC
AAGTGCAACTCATGCTTTATTAAATACAAGTCAAGCTAGATTTATGCAACAAAAGCTTCAAGCTACTTCAAGTGGGGCTTCATTAATCATGGATGATTACAAACTTGACT
TGATCAATCTTGCTTGTGGAGTGATTCGGATCTCAAGTAATTTTCTTGCCTTGAGATATTTGATCGACAAGGTTGCATGCTTAGAATCATTCAAGCTTGACTTGATCAAT
CTTACTTGTGGTGTGATTCGGATCTCATACAAGTTCTCTTGCCTTGAGATGTTTGATCGACAAGAGTTGGAAGAGAATTGTTACCACCGAGAAGGTTACAATTTGGTTAG
TGGAGATCATGGTATTGATGGGGATGTAAGTTACAACCTTTCAATTGACCATAGGTTACTCTAG
Protein sequenceShow/hide protein sequence
MDFLFGLPRTSSEHDGIWVIVDRLTKTKTVCLHLINSSATHALLNTSQARFMQQKLQATSSGASLIMDDYKLDLINLACGVIRISSNFLALRYLIDKVACLESFKLDLIN
LTCGVIRISYKFSCLEMFDRQELEENCYHREGYNLVSGDHGIDGDVSYNLSIDHRLL