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Tan0004101 (gene) of Snake gourd v1 genome

Gene IDTan0004101
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG09:39007589..39007912
RNA-Seq ExpressionTan0004101
SyntenyTan0004101
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050233.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-3266.98Show/hide
Query:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN
        M++SI+ LL  ++L G NY TWKSNLN ILV+DDLRFVLTEE PQ PA NA Q+V++AYD W+KAN+KA+VYI AS+S VLAKKHE + +A+EIM SL+ 
Subjt:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS
KAA0058365.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-3269.81Show/hide
Query:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN
        MSSSIIALLK ++LTG+NY TWK  LNMILV+ DLRFVL EE P  P++NA QSVKD YDCW KANDKA++YILAS+S +L+KKH  MV+AR+IM SL+ 
Subjt:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN

Query:  MFGQPS
        MFGQ S
Subjt:  MFGQPS
KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-3371.7Show/hide
Query:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN
        MSSSIIALLK ++LTG+NY TWKS LNMILV+ DLRFVL EE P  P +NA QSVKDAYD W KANDKA +Y+LAS+S +L+KKHE MV+AR+IM SL+ 
Subjt:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS
KAA0067938.1 gag/pol protein [Cucumis melo var. makuwa]7.7e-3369.81Show/hide
Query:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN
        MS SIIALLK ++LTG+NY TWKS LNMILV+ DLRFVL EE P  P + A QSV+DAYDCW KANDKA ++ILAS+S +L+KKHE MV+AR+IM SL+ 
Subjt:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS
TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-3371.7Show/hide
Query:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN
        MSSSIIALLK ++LTG+NY TWKS LNMILV+ DLRFVL EE P  P +NA QSVKDAYD W KANDKA +Y+LAS+S +L+KKHE MV+AR+IM SL+ 
Subjt:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS
TrEMBL top hitse value%identityAlignment
A0A5A7VA67 Gag/pol protein1.3e-3371.7Show/hide
Query:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN
        MSSSIIALLK ++LTG+NY TWKS LNMILV+ DLRFVL EE P  P +NA QSVKDAYD W KANDKA +Y+LAS+S +L+KKHE MV+AR+IM SL+ 
Subjt:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS
A0A5A7VJG3 Gag/pol protein3.7e-3369.81Show/hide
Query:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN
        MS SIIALLK ++LTG+NY TWKS LNMILV+ DLRFVL EE P  P + A QSV+DAYDCW KANDKA ++ILAS+S +L+KKHE MV+AR+IM SL+ 
Subjt:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS
A0A5D3D0D9 Gag/pol protein1.3e-3371.7Show/hide
Query:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN
        MSSSIIALLK ++LTG+NY TWKS LNMILV+ DLRFVL EE P  P +NA QSVKDAYD W KANDKA +Y+LAS+S +L+KKHE MV+AR+IM SL+ 
Subjt:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS
A0A5D3DIM3 Gag/pol protein4.9e-3369.81Show/hide
Query:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN
        MSSSIIALLK ++LTG+NY TWK  LNMILV+ DLRFVL EE P  P++NA QSVKD YDCW KANDKA++YILAS+S +L+KKH  MV+AR+IM SL+ 
Subjt:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN

Query:  MFGQPS
        MFGQ S
Subjt:  MFGQPS
A0A5D3DQJ2 Gag/pol protein4.9e-3367.92Show/hide
Query:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN
        MSSSIIALLK ++LTGKNY TWKS LNMILV+ DLR +L E+ P  P++NA QSVKDAYDCW K NDKA++YIL S+  +L+KKHE MV+AR+IM S++ 
Subjt:  MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQN

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCCTCGATAATAGCCTTACTCAAATGCGAACGCTTAACTGGCAAAAATTATACTACGTGGAAGTCCAACCTGAATATGATTCTGGTTGTTGACGACCTTCGATT
TGTACTAACTGAGGAATATCCTCAGGTCCCTGCTCGAAACGCTCCTCAATCTGTTAAGGATGCGTACGACTGTTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATTT
TGGCTAGTGTTTCTAAAGTTCTTGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAGTTCGTTGCAGAATATGTTTGGACAACCGTCTGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCCTCGATAATAGCCTTACTCAAATGCGAACGCTTAACTGGCAAAAATTATACTACGTGGAAGTCCAACCTGAATATGATTCTGGTTGTTGACGACCTTCGATT
TGTACTAACTGAGGAATATCCTCAGGTCCCTGCTCGAAACGCTCCTCAATCTGTTAAGGATGCGTACGACTGTTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATTT
TGGCTAGTGTTTCTAAAGTTCTTGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAGTTCGTTGCAGAATATGTTTGGACAACCGTCTGGATAG
Protein sequenceShow/hide protein sequence
MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQNMFGQPSG