CuGenDBv2

Gene ID	Tan0004185
Organism	Trichosanthes anguina (Snake gourd v1)
Description	F-box protein SNE-like
Genome location	LG05:8084488..8085294
RNA-Seq Expression	Tan0004185
Synteny	Tan0004185
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0060791.1 F-box protein SNE [Cucumis melo var. makuwa]

3.6e-76

94.08

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVA CVCRLWC IARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GGDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

XP_004140002.1 F-box protein SNE [Cucumis sativus]

5.5e-77

94.74

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWC IARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GG+ASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

XP_016903159.1 PREDICTED: F-box protein SNE [Cucumis melo]

1.4e-75

93.42

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVA CVCRLWC IARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GGDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

XP_022947535.1 F-box protein SNE-like [Cucurbita moschata]

2.5e-77

96.71

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWC IAR+ESVWE VCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRL GDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

XP_038902594.1 F-box protein SNE [Benincasa hispida]

1.7e-78

96.71

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWC IARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GGDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT5 F-box domain-containing protein

2.7e-77

94.74

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWC IARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GG+ASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

A0A1S4E4K7 F-box protein SNE

6.6e-76

93.42

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVA CVCRLWC IARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GGDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

A0A5A7V4V6 F-box protein SNE

1.7e-76

94.08

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVA CVCRLWC IARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GGDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

A0A6J1G764 F-box protein SNE-like

1.2e-77

96.71

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWC IAR+ESVWE VCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRL GDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

A0A6J1I140 F-box protein SNE-like

1.2e-77

96.71

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWC IAR+ESVWE VCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRL GDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

2.5e-11

34.78

Show/hide

Query:  DILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYSEVVRRVWTQDEV
        D++ E+L+R +  +L  AACV R W ++A  E +WE  C R   +       +++VV +LGG++RL+ V IRP       V  + G  +   R+  +D+V
Subjt:  DILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYSEVVRRVWTQDEV

Query:  QLSLSLFCVDYYERL
        QLSLSLF + +++ +
Subjt:  QLSLSLFCVDYYERL

Q9LUB6 F-box protein SNE

8.4e-36

54.55

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Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F IND+ D+L+EIL+RLDG SL  AACVCRLW  +AR++S+WE++CFR V SP PS S++SVV+ALGGY+ LY + IRPVL+RL
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
              + +WT+D++QLSLSL+CV YYERL     L GDA   SL+FL   VNV
Subjt:  GYSEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

Q9STX3 F-box protein GID2

7.7e-13

35.9

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Query:  NLD--ILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W + A+ E +WE +C RH T+     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTGSGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTGSGR

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

5.4e-14

35.9

Show/hide

Query:  NLD--ILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W + A+ E +WE +C RH T+     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTGSGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTGSGR

AT5G48170.1 F-box family protein

6.0e-37

54.55

Show/hide

Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F IND+ D+L+EIL+RLDG SL  AACVCRLW  +AR++S+WE++CFR V SP PS S++SVV+ALGGY+ LY + IRPVL+RL
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
              + +WT+D++QLSLSL+CV YYERL     L GDA   SL+FL   VNV
Subjt:  GYSEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAGAAGAATCACATACCTGAGCCGAACGAGAAGCGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTCATCGAAATCCTCAAGCGACTGGATGGACCGTCGCT
CGGCGTCGCCGCCTGCGTTTGCCGCCTCTGGTGCAGGATCGCTCGAAGCGAATCGGTGTGGGAACAGGTGTGCTTCCGTCACGTGACGTCGCCGCTTCCGTCGTCGGTCA
AATCGGTGGTCGCCGCCCTGGGAGGATACAAGCGGCTGTACATGGTGAGCATACGGCCGGTGCTGAGTCGACTCGGGTACTCGGAGGTGGTGAGGCGAGTTTGGACTCAG
GATGAGGTTCAACTTTCACTGTCTCTGTTTTGTGTGGATTATTACGAGCGCCTCACTGGGAGTGGCAGACTCGGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTCTG
CAACACCGTGAACGTCTGA

mRNA sequence

Show/hide mRNA sequence

TTGCATTGGTTTGAGTTTTTTTTGGTTTGGAGCTTCTTCTTTGGCCCCATCTCCTCCCTCCTCGATACCCTCTCTACCTCTTCCCTCTCAATCCTTCTCACAGACATTTT
CACAAACACGCGGACTTCGAGACGCACAGCAAGACAAATCCTATCTTAGACTTTTTCTCCTTGTTAATGAATTTTCACCAGATCTCCCTCTCTCTCTCATCATCTCTCTA
TCTAGTGTCAATTCCATATATATCACAGAAGCAGATCGTTTGCACCTACCAAATTCCTAATCATTCTAGGGCTTAAACGATAACAATGCAGAAGAATCACATACCTGAGC
CGAACGAGAAGCGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTCATCGAAATCCTCAAGCGACTGGATGGACCGTCGCTCGGCGTCGCCGCCTGCGTTTGCCGC
CTCTGGTGCAGGATCGCTCGAAGCGAATCGGTGTGGGAACAGGTGTGCTTCCGTCACGTGACGTCGCCGCTTCCGTCGTCGGTCAAATCGGTGGTCGCCGCCCTGGGAGG
ATACAAGCGGCTGTACATGGTGAGCATACGGCCGGTGCTGAGTCGACTCGGGTACTCGGAGGTGGTGAGGCGAGTTTGGACTCAGGATGAGGTTCAACTTTCACTGTCTC
TGTTTTGTGTGGATTATTACGAGCGCCTCACTGGGAGTGGCAGACTCGGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTCTGCAACACCGTGAACGTCTGATTGATC
TCCTCGTTTTTTTTTTTTTTTTGATACTTTCTCCACC

Protein sequence

Show/hide protein sequence

MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCRIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQ
DEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

Tan0004185 (gene) of Snake gourd v1 genome