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Tan0004221 (gene) of Snake gourd v1 genome

Gene IDTan0004221
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG11:37840366..37854183
RNA-Seq ExpressionTan0004221
SyntenyTan0004221
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]6.7e-0739.32Show/hide
Query:  NFKVKIQEPRGNRSSVRA--------------------KVLVEIELPVPDNLPQSAGSSTSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRA
        N K+ +  PRGNR S++                       +VEIELPVPD LP SA S  S                 + STGIVR  +D CWLHAV RA
Subjt:  NFKVKIQEPRGNRSSVRA--------------------KVLVEIELPVPDNLPQSAGSSTSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRA

Query:  KLAGSSGGAGVTNIREG
        K AG  GG    NI +G
Subjt:  KLAGSSGGAGVTNIREG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.6e-0538.21Show/hide
Query:  IQEPRGNRSSVRA--------------------KVLVEIELPVPDNLPQSAGS----STSLICCTFSYTSIVCLSGK------------AGSTGIVRKVN
        ++ PRGNRSS++                       +VEIELPVPD LP SA S    S++ +   F +  +  L  K             GS GIVR  +
Subjt:  IQEPRGNRSSVRA--------------------KVLVEIELPVPDNLPQSAGS----STSLICCTFSYTSIVCLSGK------------AGSTGIVRKVN

Query:  DDCWLHAVCRAKLAGSSGGAGVT
        D CWLH V RAK+AG  GG GVT
Subjt:  DDCWLHAVCRAKLAGSSGGAGVT

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]2.2e-0550.63Show/hide
Query:  LVEIELPVPDNLPQSAGS-------STSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRAKLAGSSGGAGVT
        +VEIELPVPD LP SA S         S I   F     V  +   GS GI+R  +D CWLHAV RAK+AGS  G GVT
Subjt:  LVEIELPVPDNLPQSAGS-------STSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRAKLAGSSGGAGVT

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]2.2e-0538.83Show/hide
Query:  IQEPRGNRSSVRA--------------------KVLVEIELPVPDNLPQSAGSSTSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRAKLAGS
        ++ PRGNR S++                       +VEIELPVPD LP      + +   ++     VC     GS GIVR  +D CWLHAVCRAK+AG 
Subjt:  IQEPRGNRSSVRA--------------------KVLVEIELPVPDNLPQSAGSSTSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRAKLAGS

Query:  SGG
         GG
Subjt:  SGG

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]9.7e-0645.78Show/hide
Query:  IQEPRGNRSSVRAKVLVEIELPVPDNLPQSAGSSTSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRAKLAGSSGG
        I +  G +S    K++VEIELPVPD LP SA S  S                   S GIVR  +D CWLHAV RAK AG+ GG
Subjt:  IQEPRGNRSSVRAKVLVEIELPVPDNLPQSAGSSTSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRAKLAGSSGG

TrEMBL top hitse value%identityAlignment
A0A5A7VIY9 Uncharacterized protein8.0e-0638.21Show/hide
Query:  IQEPRGNRSSVRA--------------------KVLVEIELPVPDNLPQSAGS----STSLICCTFSYTSIVCLSGK------------AGSTGIVRKVN
        ++ PRGNRSS++                       +VEIELPVPD LP SA S    S++ +   F +  +  L  K             GS GIVR  +
Subjt:  IQEPRGNRSSVRA--------------------KVLVEIELPVPDNLPQSAGS----STSLICCTFSYTSIVCLSGK------------AGSTGIVRKVN

Query:  DDCWLHAVCRAKLAGSSGGAGVT
        D CWLH V RAK+AG  GG GVT
Subjt:  DDCWLHAVCRAKLAGSSGGAGVT

A0A5D3BAD1 Retrotrans_gag domain-containing protein3.2e-0739.32Show/hide
Query:  NFKVKIQEPRGNRSSVRA--------------------KVLVEIELPVPDNLPQSAGSSTSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRA
        N K+ +  PRGNR S++                       +VEIELPVPD LP SA S  S                 + STGIVR  +D CWLHAV RA
Subjt:  NFKVKIQEPRGNRSSVRA--------------------KVLVEIELPVPDNLPQSAGSSTSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRA

Query:  KLAGSSGGAGVTNIREG
        K AG  GG    NI +G
Subjt:  KLAGSSGGAGVTNIREG

A0A5D3C0X3 Retrotrans_gag domain-containing protein1.0e-0550.63Show/hide
Query:  LVEIELPVPDNLPQSAGS-------STSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRAKLAGSSGGAGVT
        +VEIELPVPD LP SA S         S I   F     V  +   GS GI+R  +D CWLHAV RAK+AGS  G GVT
Subjt:  LVEIELPVPDNLPQSAGS-------STSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRAKLAGSSGGAGVT

A0A5D3CJL4 Retrotrans_gag domain-containing protein1.0e-0538.83Show/hide
Query:  IQEPRGNRSSVRA--------------------KVLVEIELPVPDNLPQSAGSSTSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRAKLAGS
        ++ PRGNR S++                       +VEIELPVPD LP      + +   ++     VC     GS GIVR  +D CWLHAVCRAK+AG 
Subjt:  IQEPRGNRSSVRA--------------------KVLVEIELPVPDNLPQSAGSSTSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRAKLAGS

Query:  SGG
         GG
Subjt:  SGG

A0A5D3CSJ5 Putative polyprotein4.7e-0645.78Show/hide
Query:  IQEPRGNRSSVRAKVLVEIELPVPDNLPQSAGSSTSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRAKLAGSSGG
        I +  G +S    K++VEIELPVPD LP SA S  S                   S GIVR  +D CWLHAV RAK AG+ GG
Subjt:  IQEPRGNRSSVRAKVLVEIELPVPDNLPQSAGSSTSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRAKLAGSSGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCTGTAAATGCTGGAATTTTGAATGGTGTGTTTTTTTGTAATTTCAAGGTTAAAATCCAGGAGCCAAGAGGAAATAGGTCGAGTGTACGGGCCAAGGTTCTAGT
AGAGATCGAGCTCCCAGTGCCTGATAACCTGCCACAGTCTGCTGGAAGCTCCACAAGTTTGATATGTTGTACTTTTTCTTATACAAGTATAGTATGCTTATCAGGTAAAG
CAGGGTCAACAGGTATTGTTAGAAAGGTGAACGATGACTGTTGGCTTCACGCCGTCTGCCGAGCTAAGTTAGCAGGTAGTTCGGGAGGGGCTGGTGTTACGAACATTCGT
GAAGGATTGACTTGCTGTTATTGGTCAATATCTATGGACACAGAAATATATCTGCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATCTGTAAATGCTGGAATTTTGAATGGTGTGTTTTTTTGTAATTTCAAGGTTAAAATCCAGGAGCCAAGAGGAAATAGGTCGAGTGTACGGGCCAAGGTTCTAGT
AGAGATCGAGCTCCCAGTGCCTGATAACCTGCCACAGTCTGCTGGAAGCTCCACAAGTTTGATATGTTGTACTTTTTCTTATACAAGTATAGTATGCTTATCAGGTAAAG
CAGGGTCAACAGGTATTGTTAGAAAGGTGAACGATGACTGTTGGCTTCACGCCGTCTGCCGAGCTAAGTTAGCAGGTAGTTCGGGAGGGGCTGGTGTTACGAACATTCGT
GAAGGATTGACTTGCTGTTATTGGTCAATATCTATGGACACAGAAATATATCTGCGGTGA
Protein sequenceShow/hide protein sequence
MKSVNAGILNGVFFCNFKVKIQEPRGNRSSVRAKVLVEIELPVPDNLPQSAGSSTSLICCTFSYTSIVCLSGKAGSTGIVRKVNDDCWLHAVCRAKLAGSSGGAGVTNIR
EGLTCCYWSISMDTEIYLR