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Tan0004223 (gene) of Snake gourd v1 genome

Gene IDTan0004223
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:18703351..18718148
RNA-Seq ExpressionTan0004223
SyntenyTan0004223
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]9.8e-1740.36Show/hide
Query:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRESKRWFSSGVPYSTWIVEIELLVPDILPY----------
        RG+R S+QT  I + + +        LSTLSVL DN+ VVSAG+APLRQRRW  R  P     K        +ST++VEIEL VPDILP           
Subjt:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRESKRWFSSGVPYSTWIVEIELLVPDILPY----------

Query:  ---------------------------------------NVCWLHSSFRAKLAGGSGGGVTTWYQS
                                               +VCWLH+ FRAK AGG GGGVTTWYQS
Subjt:  ---------------------------------------NVCWLHSSFRAKLAGGSGGGVTTWYQS

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]8.8e-1035.22Show/hide
Query:  MVGKLIEFPTTFVKQSTRGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRW-----VLRRTPLHRESKRWFSSGVPYSTW--
        MVGKLI++PTT +K   RG+R S+QT  + + + +        LSTLSVL DN+ VVSAGRA LRQRRW     +    P    +    S   P   W  
Subjt:  MVGKLIEFPTTFVKQSTRGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRW-----VLRRTPLHRESKRWFSSGVPYSTW--

Query:  IVEIELLVPDILPY------------------------NVCWLHSSFRAKLAGGSGGGV
        I+ + +L   +  +                        +VC +H+ F+AK AG  GGGV
Subjt:  IVEIELLVPDILPY------------------------NVCWLHSSFRAKLAGGSGGGV

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]4.0e-1040.28Show/hide
Query:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRE-SKRWFSSGVP-------------YSTWIVEIELLVPD
        RG+RSS+QT  + +       T    LSTLSVLRDN+ VVSAG     +      R PLHR  SKRW     P                  VEIEL VPD
Subjt:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRE-SKRWFSSGVP-------------YSTWIVEIELLVPD

Query:  ILPY------------------NVCWLHSSFRAKLAGGSGGGVT
         LP                   +VCWLH  FRAK  GG GG VT
Subjt:  ILPY------------------NVCWLHSSFRAKLAGGSGGGVT

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]4.0e-1040.28Show/hide
Query:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRE-SKRWFSSGVP-------------YSTWIVEIELLVPD
        RG+RSS+QT  + +       T    LSTLSVLRDN+ VVSAG     +      R PLHR  SKRW     P                  VEIEL VPD
Subjt:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRE-SKRWFSSGVP-------------YSTWIVEIELLVPD

Query:  ILPY------------------NVCWLHSSFRAKLAGGSGGGVT
         LP                   +VCWLH  FRAK  GG GG VT
Subjt:  ILPY------------------NVCWLHSSFRAKLAGGSGGGVT

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]9.8e-1740.36Show/hide
Query:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRESKRWFSSGVPYSTWIVEIELLVPDILPY----------
        RG+R S+QT  I + + +        LSTLSVL DN+ VVSAG+APLRQRRW  R  P     K        +ST++VEIEL VPDILP           
Subjt:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRESKRWFSSGVPYSTWIVEIELLVPDILPY----------

Query:  ---------------------------------------NVCWLHSSFRAKLAGGSGGGVTTWYQS
                                               +VCWLH+ FRAK AGG GGGVTTWYQS
Subjt:  ---------------------------------------NVCWLHSSFRAKLAGGSGGGVTTWYQS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase4.7e-1740.36Show/hide
Query:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRESKRWFSSGVPYSTWIVEIELLVPDILPY----------
        RG+R S+QT  I + + +        LSTLSVL DN+ VVSAG+APLRQRRW  R  P     K        +ST++VEIEL VPDILP           
Subjt:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRESKRWFSSGVPYSTWIVEIELLVPDILPY----------

Query:  ---------------------------------------NVCWLHSSFRAKLAGGSGGGVTTWYQS
                                               +VCWLH+ FRAK AGG GGGVTTWYQS
Subjt:  ---------------------------------------NVCWLHSSFRAKLAGGSGGGVTTWYQS

A0A5A7TPS6 Retrotrans_gag domain-containing protein4.3e-1035.22Show/hide
Query:  MVGKLIEFPTTFVKQSTRGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRW-----VLRRTPLHRESKRWFSSGVPYSTW--
        MVGKLI++PTT +K   RG+R S+QT  + + + +        LSTLSVL DN+ VVSAGRA LRQRRW     +    P    +    S   P   W  
Subjt:  MVGKLIEFPTTFVKQSTRGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRW-----VLRRTPLHRESKRWFSSGVPYSTW--

Query:  IVEIELLVPDILPY------------------------NVCWLHSSFRAKLAGGSGGGV
        I+ + +L   +  +                        +VC +H+ F+AK AG  GGGV
Subjt:  IVEIELLVPDILPY------------------------NVCWLHSSFRAKLAGGSGGGV

A0A5A7VGQ5 Uncharacterized protein1.9e-1040.28Show/hide
Query:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRE-SKRWFSSGVP-------------YSTWIVEIELLVPD
        RG+RSS+QT  + +       T    LSTLSVLRDN+ VVSAG     +      R PLHR  SKRW     P                  VEIEL VPD
Subjt:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRE-SKRWFSSGVP-------------YSTWIVEIELLVPD

Query:  ILPY------------------NVCWLHSSFRAKLAGGSGGGVT
         LP                   +VCWLH  FRAK  GG GG VT
Subjt:  ILPY------------------NVCWLHSSFRAKLAGGSGGGVT

A0A5D3BG85 Uncharacterized protein1.9e-1040.28Show/hide
Query:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRE-SKRWFSSGVP-------------YSTWIVEIELLVPD
        RG+RSS+QT  + +       T    LSTLSVLRDN+ VVSAG     +      R PLHR  SKRW     P                  VEIEL VPD
Subjt:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRE-SKRWFSSGVP-------------YSTWIVEIELLVPD

Query:  ILPY------------------NVCWLHSSFRAKLAGGSGGGVT
         LP                   +VCWLH  FRAK  GG GG VT
Subjt:  ILPY------------------NVCWLHSSFRAKLAGGSGGGVT

A0A5D3BTP3 Reverse transcriptase4.7e-1740.36Show/hide
Query:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRESKRWFSSGVPYSTWIVEIELLVPDILPY----------
        RG+R S+QT  I + + +        LSTLSVL DN+ VVSAG+APLRQRRW  R  P     K        +ST++VEIEL VPDILP           
Subjt:  RGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRESKRWFSSGVPYSTWIVEIELLVPDILPY----------

Query:  ---------------------------------------NVCWLHSSFRAKLAGGSGGGVTTWYQS
                                               +VCWLH+ FRAK AGG GGGVTTWYQS
Subjt:  ---------------------------------------NVCWLHSSFRAKLAGGSGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGAAAGCTAATTGAATTTCCTACAACTTTTGTGAAACAATCGACAAGAGGAGATAGGTCGAGTGTACAGACCAATGTTATACCCGAGGCTTTATGGTACCTTGT
TCACACAGGTCATATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAATGTTGTCGTAAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGTCTTGAGGCGCA
CCCCACTACATCGTGAGAGTAAACGTTGGTTCTCATCGGGCGTGCCCTACTCAACGTGGATTGTAGAGATCGAGCTCCTAGTACCTGACATCCTGCCATACAATGTCTGT
TGGCTTCATTCCTCTTTCCGGGCTAAGTTAGCCGGTGGTTCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGAAAGCTAATTGAATTTCCTACAACTTTTGTGAAACAATCGACAAGAGGAGATAGGTCGAGTGTACAGACCAATGTTATACCCGAGGCTTTATGGTACCTTGT
TCACACAGGTCATATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAATGTTGTCGTAAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGTCTTGAGGCGCA
CCCCACTACATCGTGAGAGTAAACGTTGGTTCTCATCGGGCGTGCCCTACTCAACGTGGATTGTAGAGATCGAGCTCCTAGTACCTGACATCCTGCCATACAATGTCTGT
TGGCTTCATTCCTCTTTCCGGGCTAAGTTAGCCGGTGGTTCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MVGKLIEFPTTFVKQSTRGDRSSVQTNVIPEALWYLVHTGHILLSTLSVLRDNNVVVSAGRAPLRQRRWVLRRTPLHRESKRWFSSGVPYSTWIVEIELLVPDILPYNVC
WLHSSFRAKLAGGSGGGVTTWYQSS