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Tan0004240 (gene) of Snake gourd v1 genome

Gene IDTan0004240
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG05:75750734..75751087
RNA-Seq ExpressionTan0004240
SyntenyTan0004240
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]5.6e-3773.73Show/hide
Query:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT
        MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTP ++ +DKGKN++QE QP Q + SVASLSVQQLQD I S IRAQYGGP+Q    YSKPYT
Subjt:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT

Query:  KRIDNLRMPTGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPTGYQPPKFQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]5.6e-3773.73Show/hide
Query:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT
        MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTP ++ +DKGKN++QE QP Q + SVASLSVQQLQD I S IRAQYGGP+Q    YSKPYT
Subjt:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT

Query:  KRIDNLRMPTGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPTGYQPPKFQ

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]5.6e-3773.73Show/hide
Query:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT
        MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTP ++ +DKGKN++QE QP Q + SVASLSVQQLQD I S IRAQYGGP+Q    YSKPYT
Subjt:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT

Query:  KRIDNLRMPTGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPTGYQPPKFQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]5.6e-3773.73Show/hide
Query:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT
        MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTP ++ +DKGKN++QE QP Q + SVASLSVQQLQD I S IRAQYGGP+Q    YSKPYT
Subjt:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT

Query:  KRIDNLRMPTGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPTGYQPPKFQ

XP_031744658.1 uncharacterized protein LOC116405107 [Cucumis sativus]5.6e-3773.73Show/hide
Query:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT
        MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTP ++ +DKGKN++QE QP Q + SVASLSVQQLQD I S IRAQYGGP+Q    YSKPYT
Subjt:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT

Query:  KRIDNLRMPTGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPTGYQPPKFQ

TrEMBL top hitse value%identityAlignment
A0A5A7T9K9 Ty3-gypsy retrotransposon protein6.7e-3670.34Show/hide
Query:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT
        MAEMERKIN LMKA EERD EI  L+ Q++ +E  ESSQTP ++  DKGKN++QE QP Q + SVASLSVQQLQD I++FIRAQYGGP Q    YSKPYT
Subjt:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT

Query:  KRIDNLRMPTGYQPPKFQ
        KRID+LRMP GYQPPKFQ
Subjt:  KRIDNLRMPTGYQPPKFQ

A0A5A7VDN4 Ty3-gypsy retrotransposon protein9.7e-3569.49Show/hide
Query:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT
        MAEMERKIN LMKAVEERD EI  L+ Q++ +E  ESSQTP ++  DKGKN++Q+ QP Q + SVASLSVQQLQD I + IRAQYGGP      YSKPYT
Subjt:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT

Query:  KRIDNLRMPTGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPTGYQPPKFQ

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.3e-3470.34Show/hide
Query:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT
        MAEMERKIN LMKAVEERD EI  L+ Q++ +E  ESSQTP ++  DKGKN++QE QP Q + SVASLSVQQLQD I + IRAQYGGP Q    YSK YT
Subjt:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT

Query:  KRIDNLRMPTGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPTGYQPPKFQ

A0A5D3BZH8 Ty3-gypsy retrotransposon protein5.7e-3572.03Show/hide
Query:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT
        MAEMERKIN LMK VEERD EIA LK Q++  E  ESSQTP ++  DKGKN++QE QP Q + SVASLSVQQLQD I + IRAQYGGP Q    YSKPYT
Subjt:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT

Query:  KRIDNLRMPTGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPTGYQPPKFQ

A0A5D3DIN4 Ty3-gypsy retrotransposon protein1.3e-3469.49Show/hide
Query:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT
        M EME+KIN LMK VEERD EIA LK Q++  E  ESS+TP ++  DKGKN++QE QP Q + SVASLSVQQLQD I++ IRAQYGGP+Q    YSKPYT
Subjt:  MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYT

Query:  KRIDNLRMPTGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPTGYQPPKFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGCCTACCTCAAAAGCCAAGTCCAAAACAAAGAAATGGTTGAATC
TAGTCAAACCCCTGCAATAAGAAACAATGACAAGGGGAAAAATATCATCCAAGAGGAGCAACCGCCTCAACTAGCTTCAGTTGCTTCTTTATCCGTCCAACAACTACAAG
ACACGATCATGAGTTTTATCAGAGCTCAATATGGCGGACCCGCTCAAAATCCTCTCACATACTCCAAACCTTACACCAAGAGGATTGACAATTTGAGGATGCCCACAGGG
TACCAACCTCCAAAGTTCCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGCCTACCTCAAAAGCCAAGTCCAAAACAAAGAAATGGTTGAATC
TAGTCAAACCCCTGCAATAAGAAACAATGACAAGGGGAAAAATATCATCCAAGAGGAGCAACCGCCTCAACTAGCTTCAGTTGCTTCTTTATCCGTCCAACAACTACAAG
ACACGATCATGAGTTTTATCAGAGCTCAATATGGCGGACCCGCTCAAAATCCTCTCACATACTCCAAACCTTACACCAAGAGGATTGACAATTTGAGGATGCCCACAGGG
TACCAACCTCCAAAGTTCCAGTAG
Protein sequenceShow/hide protein sequence
MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLASVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYTKRIDNLRMPTG
YQPPKFQ