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Tan0004254 (gene) of Snake gourd v1 genome

Gene IDTan0004254
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationLG02:1361174..1361446
RNA-Seq ExpressionTan0004254
SyntenyTan0004254
Gene Ontology termsGO:0045168 - cell-cell signaling involved in cell fate commitment (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR039617 - CLAVATA3/ESR (CLE)-related protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061638.1 hypothetical protein E6C27_scaffold212G00060 [Cucumis melo var. makuwa]7.2e-2476.92Show/hide
Query:  LRFNTNLAPLMAALFMVMLVATVAGRHATP-PWTTEEATE--SSNSIMIMRKLGYSKSQMEHLRRL-SSSTERYTPGGPDSQHHSQPPRLP
        LR N  LAPLMA LFMVMLV   A RHAT  PWT EEATE  SS+  MIMRK GYSK QMEHLRRL SSST RY PGGPDSQHHSQPPRLP
Subjt:  LRFNTNLAPLMAALFMVMLVATVAGRHATP-PWTTEEATE--SSNSIMIMRKLGYSKSQMEHLRRL-SSSTERYTPGGPDSQHHSQPPRLP

KAE8647339.1 hypothetical protein Csa_003556, partial [Cucumis sativus]8.2e-2073.03Show/hide
Query:  LRFNTNLA-PLMAALFMVMLVATVAGRHATP-PWTTEEATE--SSNSIMIMRKLGYSKSQMEHLRRL-SSSTERYTPGGPDSQHHSQPP
        LRFN  LA PLMA LFM MLV      HAT   WT EEATE  SS+S M+MRK GYSK QMEHLRRL SSSTERY PGGPDSQHHSQPP
Subjt:  LRFNTNLA-PLMAALFMVMLVATVAGRHATP-PWTTEEATE--SSNSIMIMRKLGYSKSQMEHLRRL-SSSTERYTPGGPDSQHHSQPP

KAG6572409.1 hypothetical protein SDJN03_29137, partial [Cucurbita argyrosperma subsp. sororia]7.4e-2164.89Show/hide
Query:  RFNTNLAPLMAALFMVMLVATVAGRHATPPWTTEEA--------TESSNSIMIMRKLGYSKSQMEHLRRLSSSTERYTPGGPDSQHHSQPPRLP
        RFN   APL A +FMVMLV   AGRHA P  T E A        + SS+S MIMR+LGY+KSQMEHLRRLSSST RY PGGPDSQHHS+ PR P
Subjt:  RFNTNLAPLMAALFMVMLVATVAGRHATPPWTTEEA--------TESSNSIMIMRKLGYSKSQMEHLRRLSSSTERYTPGGPDSQHHSQPPRLP

KAG6589262.1 hypothetical protein SDJN03_17827, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3383.33Show/hide
Query:  MANLRFNTNLAPLMAALFMVMLVATVAGRHATPPWTTEEATESSNSIMIMRKLGYSKSQMEHLRRLSSSTERYTPGGPDSQHHSQPPRLP
        MANLRF++ LAP MA LF+ ML+ TVAGRHATPPWTTEE TESS+SIMIMRK GYSK+QMEHL+RLSSSTERYTPGGPDSQHHS PPRLP
Subjt:  MANLRFNTNLAPLMAALFMVMLVATVAGRHATPPWTTEEATESSNSIMIMRKLGYSKSQMEHLRRLSSSTERYTPGGPDSQHHSQPPRLP

TrEMBL top hitse value%identityAlignment
A0A0A0KGI4 Uncharacterized protein5.5e-2273.91Show/hide
Query:  LRFNTNLA-PLMAALFMVMLVATVAGRHATP-PWTTEEATE--SSNSIMIMRKLGYSKSQMEHLRRL-SSSTERYTPGGPDSQHHSQPPRLP
        LRFN  LA PLMA LFM MLV      HAT   WT EEATE  SS+S M+MRK GYSK QMEHLRRL SSSTERY PGGPDSQHHSQPPRLP
Subjt:  LRFNTNLA-PLMAALFMVMLVATVAGRHATP-PWTTEEATE--SSNSIMIMRKLGYSKSQMEHLRRL-SSSTERYTPGGPDSQHHSQPPRLP

A0A438JK32 Pentatricopeptide repeat-containing protein8.9e-0448.98Show/hide
Query:  NSIMIMRKLGYSKSQMEHLRRLS---SSTERYTPGGPDSQHHSQPPRLP
        +S +++R LGY +S+++HL+R+S   +   R +PGGPD QHHS+PP LP
Subjt:  NSIMIMRKLGYSKSQMEHLRRLS---SSTERYTPGGPDSQHHSQPPRLP

A0A5D3C664 Uncharacterized protein3.5e-2476.92Show/hide
Query:  LRFNTNLAPLMAALFMVMLVATVAGRHATP-PWTTEEATE--SSNSIMIMRKLGYSKSQMEHLRRL-SSSTERYTPGGPDSQHHSQPPRLP
        LR N  LAPLMA LFMVMLV   A RHAT  PWT EEATE  SS+  MIMRK GYSK QMEHLRRL SSST RY PGGPDSQHHSQPPRLP
Subjt:  LRFNTNLAPLMAALFMVMLVATVAGRHATP-PWTTEEATE--SSNSIMIMRKLGYSKSQMEHLRRL-SSSTERYTPGGPDSQHHSQPPRLP

A0A7J9BSX3 Uncharacterized protein5.2e-0433.75Show/hide
Query:  MAALFMVMLVATVAGRHATPPWTTEEATESSNSIMIMRKLGYSKSQMEHLRR---LSSSTERYTPGGPDSQHHSQPPRLP
        +AA F+V+L+++   +            +  +S +++RKLGY ++++EH R+   L + ++R +PGGPD +HH+ PPR+P
Subjt:  MAALFMVMLVATVAGRHATPPWTTEEATESSNSIMIMRKLGYSKSQMEHLRR---LSSSTERYTPGGPDSQHHSQPPRLP

B9SGL4 Uncharacterized protein8.9e-0447.27Show/hide
Query:  EATESSNSIMIMRKLGYSKSQMEHLRRLS---SSTERYTPGGPDSQHHSQPPRLP
        EA    NS +++R +GY++S++EH RR+S   S T+R +PGGPD +HHS  P  P
Subjt:  EATESSNSIMIMRKLGYSKSQMEHLRRLS---SSTERYTPGGPDSQHHSQPPRLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATCTTCGTTTCAACACAAACCTTGCTCCATTAATGGCTGCCCTTTTCATGGTGATGCTCGTCGCCACCGTCGCCGGCCGCCATGCAACGCCGCCGTGGACGAC
GGAGGAGGCCACTGAGAGCAGCAACAGCATTATGATAATGCGTAAATTAGGTTATAGCAAAAGCCAAATGGAGCATTTAAGAAGACTTTCTTCTTCCACTGAAAGATACA
CTCCTGGAGGACCAGATTCTCAGCACCATTCTCAACCACCTCGTTTACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAATCTTCGTTTCAACACAAACCTTGCTCCATTAATGGCTGCCCTTTTCATGGTGATGCTCGTCGCCACCGTCGCCGGCCGCCATGCAACGCCGCCGTGGACGAC
GGAGGAGGCCACTGAGAGCAGCAACAGCATTATGATAATGCGTAAATTAGGTTATAGCAAAAGCCAAATGGAGCATTTAAGAAGACTTTCTTCTTCCACTGAAAGATACA
CTCCTGGAGGACCAGATTCTCAGCACCATTCTCAACCACCTCGTTTACCTTAA
Protein sequenceShow/hide protein sequence
MANLRFNTNLAPLMAALFMVMLVATVAGRHATPPWTTEEATESSNSIMIMRKLGYSKSQMEHLRRLSSSTERYTPGGPDSQHHSQPPRLP