CuGenDBv2

Gene ID	Tan0004270
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Cytochrome b559 subunit alpha
Genome location	LG01:45285024..45285275
RNA-Seq Expression	Tan0004270
Synteny	Tan0004270
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0009536 - plastid (cellular component) GO:0009539 - photosystem II reaction center (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR006216 - Photosystem II cytochrome b559, conserved site IPR013081 - Photosystem II cytochrome b559, N-terminal IPR037025 - Photosystem II cytochrome b559, alpha subunit superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ABY85772.1 PSII reaction centre subunit V [Silene atocioides]

8.2e-19

66.27

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSFP+ ITS+RYWVIHSITIPSLFIA WLFVST                     GIPLITG FDS EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

AEX95608.1 photosystem II cytochrome b559 alpha subunit [Beaucarnea hookeri]

1.3e-19

67.47

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIAGWLFVST                     GIPLITG FDS EQLDEFSRPF
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

KAG4151869.1 hypothetical protein ERO13_D04G096692v2 [Gossypium hirsutum]

6.3e-19

66.27

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIA WLFVST                     GIPLITGHFDS EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

TYI86979.1 hypothetical protein E1A91_D04G105100v1 [Gossypium mustelinum]

6.3e-19

66.27

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIA WLFVST                     GIPLITGHFDS EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

YP_009582535.1 PsbE [Alstroemeria hybrid cultivar]

1.3e-19

67.47

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIAGWLFVST                     GIPLITGHFDS EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

TrEMBL top hits

e value

%identity

Alignment

A0A1C7AC01 Cytochrome b559 subunit alpha

6.1e-20

67.47

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIAGWLFVST                     GIPLITGHFDS EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

A0A481YNM2 Cytochrome b559 subunit alpha

6.1e-20

67.47

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIAGWLFVST                     GIPLITGHFDS EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

A0A5D2VCD2 Cytochrome b559 subunit alpha

3.0e-19

66.27

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIA WLFVST                     GIPLITGHFDS EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

H2FAC5 Cytochrome b559 subunit alpha

6.1e-20

67.47

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIAGWLFVST                     GIPLITG FDS EQLDEFSRPF
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

U5KC17 Cytochrome b559 subunit alpha

6.1e-20

67.47

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIAGWLFVST                     GIPLITGHFDS EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

SwissProt top hits

e value

%identity

Alignment

P56779 Cytochrome b559 subunit alpha

1.4e-21

66.27

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIAGWLFVST                     GIPLITG FDS EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

P59702 Cytochrome b559 subunit alpha

1.4e-21

66.27

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIAGWLFVST                     GIPLITG FDS EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

P69382 Cytochrome b559 subunit alpha

1.4e-21

66.27

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIAGWLFVST                     GIPLITG FDS EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

Q4VZH5 Cytochrome b559 subunit alpha

1.4e-21

66.27

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIAGWLFVST                     GIPLITG FDS EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

Q70XY9 Cytochrome b559 subunit alpha

1.4e-21

66.27

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIAGWLFVST                     GIPLITG FDS EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00580.1 photosystem II reaction center protein E

3.8e-22

65.06

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Query:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF
        MSGSTGERSF + ITS+RYWVIHSITIPSLFIAGWLFVST                     GIPLITG FD  EQLDEFSR F
Subjt:  MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVST---------------------GIPLITGHFDSFEQLDEFSRPF

Sequences

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CDS sequence

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ATGTCTGGAAGCACAGGAGAACGTTCTTTTCCTAATACTATCACCAGTGTTCGATACTGGGTCATTCATAGTATTACTATACCTTCTCTATTCATTGCAGGTTGGTTATT
CGTCAGCACGGGAATTCCATTAATAACTGGCCATTTTGATTCTTTTGAACAACTTGATGAATTTAGTAGACCTTTTTAG

mRNA sequence

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ATGTCTGGAAGCACAGGAGAACGTTCTTTTCCTAATACTATCACCAGTGTTCGATACTGGGTCATTCATAGTATTACTATACCTTCTCTATTCATTGCAGGTTGGTTATT
CGTCAGCACGGGAATTCCATTAATAACTGGCCATTTTGATTCTTTTGAACAACTTGATGAATTTAGTAGACCTTTTTAG

Protein sequence

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MSGSTGERSFPNTITSVRYWVIHSITIPSLFIAGWLFVSTGIPLITGHFDSFEQLDEFSRPF

Tan0004270 (gene) of Snake gourd v1 genome