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Tan0004334 (gene) of Snake gourd v1 genome

Gene IDTan0004334
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG09:15931798..15943923
RNA-Seq ExpressionTan0004334
SyntenyTan0004334
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-1964.58Show/hide
Query:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER
        VEIELP+P  LP SA S  S    T +ELY +S+      S GI+R  +DVCWLHAV+RAK  G  GGGVMPPRTSRRRRQ+QD TQDPTQGQSER
Subjt:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.3e-1857.14Show/hide
Query:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKS------------------ICKTRSTGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQD
        VEIELPVP  LP SA S  S    TW+ELY +S                  +C   S GIVR  +D+CWLHAV+ AK AGS GGGVMPPRTSRRRRQ+QD
Subjt:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKS------------------ICKTRSTGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQD

Query:  RTQDPTQGQSER
          Q PTQGQSER
Subjt:  RTQDPTQGQSER

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-1762.5Show/hide
Query:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER
        VEIELPVP  LP SA S  S    TW+ELY + +        GIVRE +DVCWLHAV+RAK AG  GGGVMPP TS+RRR +QD  Q PTQGQSER
Subjt:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-1964.58Show/hide
Query:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER
        VEIELP+P  LP SA S  S    T +ELY +S+      S GI+R  +DVCWLHAV+RAK  G  GGGVMPPRTSRRRRQ+QD TQDPTQGQSER
Subjt:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-1762.5Show/hide
Query:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER
        VEIELPVP  LP SA S  S    TW+ELY + +        GIVRE +DVCWLHAV+RAK AG  GGGVMPP TS+RRR +QD  Q PTQGQSER
Subjt:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase9.5e-2064.58Show/hide
Query:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER
        VEIELP+P  LP SA S  S    T +ELY +S+      S GI+R  +DVCWLHAV+RAK  G  GGGVMPPRTSRRRRQ+QD TQDPTQGQSER
Subjt:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER

A0A5A7UAH6 CCHC-type domain-containing protein6.2e-1957.14Show/hide
Query:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKS------------------ICKTRSTGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQD
        VEIELPVP  LP SA S  S    TW+ELY +S                  +C   S GIVR  +D+CWLHAV+ AK AGS GGGVMPPRTSRRRRQ+QD
Subjt:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKS------------------ICKTRSTGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQD

Query:  RTQDPTQGQSER
          Q PTQGQSER
Subjt:  RTQDPTQGQSER

A0A5A7VMG9 Reverse transcriptase5.2e-1862.5Show/hide
Query:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER
        VEIELPVP  LP SA S  S    TW+ELY + +        GIVRE +DVCWLHAV+RAK AG  GGGVMPP TS+RRR +QD  Q PTQGQSER
Subjt:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER

A0A5D3D150 Reverse transcriptase9.5e-2064.58Show/hide
Query:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER
        VEIELP+P  LP SA S  S    T +ELY +S+      S GI+R  +DVCWLHAV+RAK  G  GGGVMPPRTSRRRRQ+QD TQDPTQGQSER
Subjt:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER

A0A5D3DX39 Reverse transcriptase5.2e-1862.5Show/hide
Query:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER
        VEIELPVP  LP SA S  S    TW+ELY + +        GIVRE +DVCWLHAV+RAK AG  GGGVMPP TS+RRR +QD  Q PTQGQSER
Subjt:  VEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTR--STGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATGTAGAGATCGAGCTCCCGGTGCCTAAAAACCTGCCATGGTCTGCTGGAAGCTTCACAAGTTTGATATTTTGTACGTGGGTGGAGTTGTATAGAAAGTCTAT
ATGTAAAACACGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTACCGGGCAAAGTTAGCAGGTAGTTCGGGAGGGGGAGTCATGCCAC
CACGTACTAGCAGACGACGCAGGCAAGATCAGGACAGGACGCAGGATCCTACCCAAGGGCAATCTGAGAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATGTAGAGATCGAGCTCCCGGTGCCTAAAAACCTGCCATGGTCTGCTGGAAGCTTCACAAGTTTGATATTTTGTACGTGGGTGGAGTTGTATAGAAAGTCTAT
ATGTAAAACACGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTACCGGGCAAAGTTAGCAGGTAGTTCGGGAGGGGGAGTCATGCCAC
CACGTACTAGCAGACGACGCAGGCAAGATCAGGACAGGACGCAGGATCCTACCCAAGGGCAATCTGAGAGGTGA
Protein sequenceShow/hide protein sequence
MLNVEIELPVPKNLPWSAGSFTSLIFCTWVELYRKSICKTRSTGIVREVNDVCWLHAVYRAKLAGSSGGGVMPPRTSRRRRQDQDRTQDPTQGQSER