CuGenDBv2

Gene ID	Tan0004364
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ribosomal protein
Genome location	LG09:66245962..66248504
RNA-Seq Expression	Tan0004364
Synteny	Tan0004364
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7023520.1 rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.3e-44

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASEGPSP LF  SEVKQEILPSHSSR GLASL+PQKHEPTML GWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN

XP_022144930.1 uncharacterized protein LOC111014487 [Momordica charantia]

6.9e-44

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASEGPSP LFSRSEVKQEILPS+S R GLASLIPQKHEPT +FGWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN

XP_022933442.1 uncharacterized protein LOC111440855 [Cucurbita moschata]

6.9e-44

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSPSLFSRSEVKQEILPSHSSR GLASLIPQKHEPTMLFGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN

XP_022987917.1 uncharacterized protein LOC111485318 [Cucurbita maxima]

1.1e-44

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASEGPSP LF  SEVKQEILPSHSSR GLASL+PQKHEPTMLFGWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]

1.4e-44

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASEGP PSLFSRSEVKQE+LPSHSSR GLASLIPQKHEPTML GWRMGLASILLKK N
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B8W2 Ribosomal protein

2.2e-43

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLST A EGPSPSLFSR+EVKQEILPS  SRMGLASLIPQK+EPTML GWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN

A0A6J1CT08 Ribosomal protein

3.4e-44

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASEGPSP LFSRSEVKQEILPS+S R GLASLIPQKHEPT +FGWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN

A0A6J1EZS5 Ribosomal protein

3.4e-44

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSPSLFSRSEVKQEILPSHSSR GLASLIPQKHEPTMLFGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN

A0A6J1I4R0 Ribosomal protein

9.8e-44

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTV+RRGRVY+YCSSNPKHKQRQGLST ASE PSPSLFSRSEVK++ILPSHSSR GLASLIPQKHEPTMLFGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN

A0A6J1JBN8 Ribosomal protein

5.2e-45

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASEGPSP LF  SEVKQEILPSHSSR GLASL+PQKHEPTMLFGWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN

SwissProt top hits

e value

%identity

Alignment

A5VLI2 50S ribosomal protein L36

8.9e-10

78.95

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV V CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

B2G8V5 50S ribosomal protein L36

8.9e-10

78.95

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV V CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

B3WAJ5 50S ribosomal protein L36

1.2e-09

73.68

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV + CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

P73300 50S ribosomal protein L36

2.3e-10

78.95

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVRASVKKMC+ CR ++RRGRV V CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

Q035A6 50S ribosomal protein L36

1.2e-09

73.68

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV + CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G20180.1 Ribosomal protein L36

2.6e-28

64.08

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPS-LFSRSEVKQEI--LPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLK
        MKVR+SVKKMCEFC+TVKRRGRVYV CSSNPKHKQRQG S+ A EG +PS LF+     QE+  LP      GLASL+ ++  PT  FGWR GLASIL K
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPS-LFSRSEVKQEI--LPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLK

Query:  KHN
        + N
Subjt:  KHN

AT5G20180.2 Ribosomal protein L36

2.6e-28

64.08

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPS-LFSRSEVKQEI--LPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLK
        MKVR+SVKKMCEFC+TVKRRGRVYV CSSNPKHKQRQG S+ A EG +PS LF+     QE+  LP      GLASL+ ++  PT  FGWR GLASIL K
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPS-LFSRSEVKQEI--LPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLK

Query:  KHN
        + N
Subjt:  KHN

ATCG00760.1 ribosomal protein L36

7.7e-09

68.42

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MK+RASV+K+CE CR ++RRGR+ V C SNP+HKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

Sequences

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CDS sequence

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ATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAAGCGTCGAGGTCGAGTGTATGTATACTGCTCATCCAATCCCAAACACAAACAACGCCA
AGGCCTATCAACACTTGCAAGTGAAGGTCCTTCTCCTTCTTTGTTCTCAAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCGCGAATGGGGCTGGCTTCTC
TCATCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCGATCCTGTTGAAGAAACACAATTAG

mRNA sequence

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GTAAGTGTTTGTTGTGTTCATTTGGGTTTGAGAGAAAAGGCTCGATACTGCGTTTTTACGTTCAATTACAACTCTCTGCTGGACGACGTCGCTCCCGATTTGAAGCCATG
AAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAAGCGTCGAGGTCGAGTGTATGTATACTGCTCATCCAATCCCAAACACAAACAACGCCAAGG
CCTATCAACACTTGCAAGTGAAGGTCCTTCTCCTTCTTTGTTCTCAAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCGCGAATGGGGCTGGCTTCTCTCA
TCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCGATCCTGTTGAAGAAACACAATTAGTGCTGAAGAAACACAAAAGGAGATCTGAAG
TCGACGATTACAAACATAGTGATTTCGAGTGCCATGGCAATCCTGCTACATTGATTATTACTTTATTGGTTCCTCTTTGACCCTCTTTCGCAATGCCAGTATTTTCAACA
ATGATTCTGCTTTCTCTAAATAGAAATAAGCACTGCTGCTCTCAGTTTTGCTCTTTGAGTTGGTTTTGATCTTTAGAATGGAAGAAAGAGAAGGTGTTACTTTGGATATC
ACAGTTGTGTTCAATTGCTTGGTTATTGTTTTACTTTTATATACTCCGGTTCAGTCAGACCAGAGTTGAACCGGCAATCATTTTTATTATCAGCTTCTCAAACTTGGCGG
CAGAACTGTAAATCTTCAGACCAGAGACACAGTAATCTGCTAGCCATCTATTCTGTTGGAGTCTAGAAGATGATTTTCAATCCTTAATTTTCTTCTAAATAATCCCCTAA
TCTTCCACTATATGATGATTGAAGTTATATTCCAACCTAATAAGTAAAGCTTAAATTCTATTTTATTCTCAACTTCCATATTTATTTCAACTTTGTCTGGTGTTATATGT
TCCAGTCCCTCAACTAATTGCAATGCAACATGAGAATTAAACTTTAAATATAGATTTTCATGCGGTATAAAAATCAAAGGCAGTAAGTTCGAAGAAAATAAGATATCTAA
TGGACTTGTGGATAACTCAGTAAAATTCCATGAAAATACAAACTTTTTGGTCTAAAGTTTATTTCTTTTTATATGTTTAATTCACGTCAAATTCGAATTCGAATATCTAT
TACTTATTCTAAAGTTGAAGATTCGGTCTCGTCTGCTCTGTTGAAAAAAAAAACCCCATGAAGTAAAGTGTGTTAAATGGGATATAATATAATTGAAGGTCTAAGAAGTA
GATTAAAATAGATAACTATTTTTG

Protein sequence

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MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTLASEGPSPSLFSRSEVKQEILPSHSSRMGLASLIPQKHEPTMLFGWRMGLASILLKKHN

Tan0004364 (gene) of Snake gourd v1 genome