; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0004409 (gene) of Snake gourd v1 genome

Gene IDTan0004409
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic
Genome locationLG11:1190710..1191264
RNA-Seq ExpressionTan0004409
SyntenyTan0004409
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051071.1 fibroin heavy chain [Cucumis melo var. makuwa]9.3e-3369.17Show/hide
Query:  MKSD-SSSPWKWNRAITNNFHTKNDDNKFSLPNIFDRNAKEPP--ALVFEAGGGAGVGCGVGLGFGLVGGIGHGG-WPWNHLHLVFGLGLGCGVGIGLGI
        MKSD SSSPW       NNFHT      FS  +   RN KE P  ALV EAGGGAGVGCG+G GFGLVGGIGHGG  PWNHLHLVFGLG GCGVG+GLGI
Subjt:  MKSD-SSSPWKWNRAITNNFHTKNDDNKFSLPNIFDRNAKEPP--ALVFEAGGGAGVGCGVGLGFGLVGGIGHGG-WPWNHLHLVFGLGLGCGVGIGLGI

Query:  GQGIGYGFSFDALDSYFSDHKPNPKHK-PPLIQ
        GQG GYGFSF++LDSYFS    +PKHK P LIQ
Subjt:  GQGIGYGFSFDALDSYFSDHKPNPKHK-PPLIQ

KAE8022053.1 hypothetical protein FH972_007887 [Carpinus fangiana]2.6e-2751.18Show/hide
Query:  MKSDSSSPWKWNRAITNNFHTKNDDNKFSLPNIFDRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQGI
        +K+DS S WKWN  ++N    KN+  +F +   F    +    +V   G G G+GCGVG+GFGLVGGIG+GGWPWNHL +VFG G+GCGVG+G G GQGI
Subjt:  MKSDSSSPWKWNRAITNNFHTKNDDNKFSLPNIFDRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQGI

Query:  GYGFSFDALDSYFSDHKPNPKHKPPLI
        GYGFS ++L+SY S    +   K  L+
Subjt:  GYGFSFDALDSYFSDHKPNPKHKPPLI

KAG6578355.1 hypothetical protein SDJN03_22803, partial [Cucurbita argyrosperma subsp. sororia]1.3e-5584.21Show/hide
Query:  MKSDSSSPWKWNRAITNNFHTKNDDNKFSLPNIFD---RNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHGG-WPWNHLHLVFGLGLGCGVGIGLGI
        MKSDS+SPWKWN AITNNFHTK D + FSLPNIFD   RNAK+PP LV +AGGGAGVGCGVGLGFGLVGGIGHGG  PWNHLHLVFGLGLGCGVG+GLGI
Subjt:  MKSDSSSPWKWNRAITNNFHTKNDDNKFSLPNIFD---RNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHGG-WPWNHLHLVFGLGLGCGVGIGLGI

Query:  GQGIGYGFSFDALDSYFSDHKPNPKHKPPLIQI
        G+GIGYG SFD+LDSYFSDHKPNP+ KPPLIQI
Subjt:  GQGIGYGFSFDALDSYFSDHKPNPKHKPPLIQI

KGN63146.1 hypothetical protein Csa_022245 [Cucumis sativus]2.5e-3064.71Show/hide
Query:  MKSDSS-SPWKWNRAITNNFHTKNDDNKFSLPNIF-----DRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGH-GGWPWNHLHLVFGLGLGCGVGIG
        MKSDSS SPW       NNF           P IF      RN KE PALV EAGGGAGVGCG+G+GFGLVGGIGH G  PWNHLHLVFGLG GCGVG+G
Subjt:  MKSDSS-SPWKWNRAITNNFHTKNDDNKFSLPNIF-----DRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGH-GGWPWNHLHLVFGLGLGCGVGIG

Query:  LGIGQGIGYGFSFDALDSYFSDHKPNPKHK-PPLIQ
        LGIGQG GYG SF ++DSYFS    NPK K P LIQ
Subjt:  LGIGQGIGYGFSFDALDSYFSDHKPNPKHK-PPLIQ

PON49222.1 hypothetical protein TorRG33x02_318200 [Trema orientale]2.6e-2754.7Show/hide
Query:  DSSSPWKWNRAITNNFHTKNDDNKFSLPNIFDRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQGIGYG
        D+SS W WN+        +N + +F +    +R  ++    V   GGGAG+GCGVGLGFGLVGG+G+GGWPWNHL LVFG+G GCG+GIG G GQGIGYG
Subjt:  DSSSPWKWNRAITNNFHTKNDDNKFSLPNIFDRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQGIGYG

Query:  FSFDALD-SYFSDHKPN
        +SF++L+ SY S+H  N
Subjt:  FSFDALD-SYFSDHKPN

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ2 Uncharacterized protein1.2e-3064.71Show/hide
Query:  MKSDSS-SPWKWNRAITNNFHTKNDDNKFSLPNIF-----DRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGH-GGWPWNHLHLVFGLGLGCGVGIG
        MKSDSS SPW       NNF           P IF      RN KE PALV EAGGGAGVGCG+G+GFGLVGGIGH G  PWNHLHLVFGLG GCGVG+G
Subjt:  MKSDSS-SPWKWNRAITNNFHTKNDDNKFSLPNIF-----DRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGH-GGWPWNHLHLVFGLGLGCGVGIG

Query:  LGIGQGIGYGFSFDALDSYFSDHKPNPKHK-PPLIQ
        LGIGQG GYG SF ++DSYFS    NPK K P LIQ
Subjt:  LGIGQGIGYGFSFDALDSYFSDHKPNPKHK-PPLIQ

A0A2N9FV55 Uncharacterized protein3.7e-2751.54Show/hide
Query:  MKSDSSSPWK-WNRAITNNFHTKNDDNKFSLPNIFDRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQG
        +K+DS+S W  WN    N+   KN+  +F +      N  +   +V   GGG G+GCGVG+GFGLVGGIG+GGWPWNHL LVFG+G+GCGVG+G G GQG
Subjt:  MKSDSSSPWK-WNRAITNNFHTKNDDNKFSLPNIFDRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQG

Query:  IGYGFSFDALDSYFSDHKPNPKHKPPLIQI
        IG GFS D+L+SY S    +   K  +I+I
Subjt:  IGYGFSFDALDSYFSDHKPNPKHKPPLIQI

A0A2P5BK94 Uncharacterized protein1.3e-2754.7Show/hide
Query:  DSSSPWKWNRAITNNFHTKNDDNKFSLPNIFDRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQGIGYG
        D+SS W WN+        +N + +F +    +R  ++    V   GGGAG+GCGVGLGFGLVGG+G+GGWPWNHL LVFG+G GCG+GIG G GQGIGYG
Subjt:  DSSSPWKWNRAITNNFHTKNDDNKFSLPNIFDRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQGIGYG

Query:  FSFDALD-SYFSDHKPN
        +SF++L+ SY S+H  N
Subjt:  FSFDALD-SYFSDHKPN

A0A5A7UC28 Fibroin heavy chain4.5e-3369.17Show/hide
Query:  MKSD-SSSPWKWNRAITNNFHTKNDDNKFSLPNIFDRNAKEPP--ALVFEAGGGAGVGCGVGLGFGLVGGIGHGG-WPWNHLHLVFGLGLGCGVGIGLGI
        MKSD SSSPW       NNFHT      FS  +   RN KE P  ALV EAGGGAGVGCG+G GFGLVGGIGHGG  PWNHLHLVFGLG GCGVG+GLGI
Subjt:  MKSD-SSSPWKWNRAITNNFHTKNDDNKFSLPNIFDRNAKEPP--ALVFEAGGGAGVGCGVGLGFGLVGGIGHGG-WPWNHLHLVFGLGLGCGVGIGLGI

Query:  GQGIGYGFSFDALDSYFSDHKPNPKHK-PPLIQ
        GQG GYGFSF++LDSYFS    +PKHK P LIQ
Subjt:  GQGIGYGFSFDALDSYFSDHKPNPKHK-PPLIQ

A0A5N6QWW9 Uncharacterized protein1.3e-2751.18Show/hide
Query:  MKSDSSSPWKWNRAITNNFHTKNDDNKFSLPNIFDRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQGI
        +K+DS S WKWN  ++N    KN+  +F +   F    +    +V   G G G+GCGVG+GFGLVGGIG+GGWPWNHL +VFG G+GCGVG+G G GQGI
Subjt:  MKSDSSSPWKWNRAITNNFHTKNDDNKFSLPNIFDRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQGI

Query:  GYGFSFDALDSYFSDHKPNPKHKPPLI
        GYGFS ++L+SY S    +   K  L+
Subjt:  GYGFSFDALDSYFSDHKPNPKHKPPLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27695.1 glycine-rich protein7.4e-0454.55Show/hide
Query:  GGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQGIGYG
        G G G G GVG GFG+  G G GG P N L +  G G GCGVG+GLG G G  +G
Subjt:  GGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQGIGYG

AT1G27695.2 glycine-rich protein7.4e-0454.55Show/hide
Query:  GGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQGIGYG
        G G G G GVG GFG+  G G GG P N L +  G G GCGVG+GLG G G  +G
Subjt:  GGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQGIGYG

AT1G66820.1 glycine-rich protein1.5e-0948.48Show/hide
Query:  GGGAGVGCGVGLGFGLVGGIGHGGWP-WNHLHLVFGLGLGCGVGIGLGIGQGIGYGFSFDALDSYF
        G G G+GCG G+G GL GG+G G     +H ++V G G+GCG+G G G G G+G G+SFD +   F
Subjt:  GGGAGVGCGVGLGFGLVGGIGHGGWP-WNHLHLVFGLGLGCGVGIGLGIGQGIGYGFSFDALDSYF

AT4G10330.1 glycine-rich protein9.0e-1041.03Show/hide
Query:  ITNNFHTKNDDN--KFSLPNIFDRN-AKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHG-GWPWNHLHLVFGLGLGCGVGIGLGIGQGIGYGFSFDALD
        ++N   T +DD    + LP +  R+  K  PA       G GVGCG G G GL+GG+G G G P     L FGLG G G GIG+G G G+G G ++D   
Subjt:  ITNNFHTKNDDN--KFSLPNIFDRN-AKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHG-GWPWNHLHLVFGLGLGCGVGIGLGIGQGIGYGFSFDALD

Query:  SYFSDHKPNPKHKPPLI
        SY++  KP+      LI
Subjt:  SYFSDHKPNPKHKPPLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCAGACTCCAGTTCGCCATGGAAGTGGAACAGAGCAATCACAAACAACTTCCACACCAAGAATGACGACAACAAATTCTCTCTCCCCAACATTTTCGACCGGAA
CGCAAAGGAACCACCAGCCCTAGTCTTCGAGGCCGGCGGAGGAGCTGGGGTTGGCTGCGGCGTCGGACTCGGCTTCGGTCTCGTCGGCGGGATTGGCCATGGCGGCTGGC
CCTGGAATCACCTTCACCTGGTTTTTGGGCTCGGTCTCGGCTGCGGCGTTGGAATAGGGCTTGGAATTGGCCAAGGGATTGGCTATGGCTTCTCCTTCGACGCTCTCGAT
TCTTATTTCTCTGATCACAAACCCAATCCTAAACATAAGCCTCCTCTTATTCAAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATCCAATCCAATTCCTATTCCTATCTCTTTTTCATATTCCCTTCCATCTTACACAATGAAATCAGACTCCAGTTCGCCATGGAAGTGGAACAGAGCAATCACAAACAACT
TCCACACCAAGAATGACGACAACAAATTCTCTCTCCCCAACATTTTCGACCGGAACGCAAAGGAACCACCAGCCCTAGTCTTCGAGGCCGGCGGAGGAGCTGGGGTTGGC
TGCGGCGTCGGACTCGGCTTCGGTCTCGTCGGCGGGATTGGCCATGGCGGCTGGCCCTGGAATCACCTTCACCTGGTTTTTGGGCTCGGTCTCGGCTGCGGCGTTGGAAT
AGGGCTTGGAATTGGCCAAGGGATTGGCTATGGCTTCTCCTTCGACGCTCTCGATTCTTATTTCTCTGATCACAAACCCAATCCTAAACATAAGCCTCCTCTTATTCAAA
TTTGAAGTCCTTCCCTATTTCGTTTAACCTTGTTTTTAGGGTTTTTCTTTTTTGGGATAAATATTCGTGTTATCTGAATATATATGGATGTGAAATGTTGAGCTTGAGTT
ATCAA
Protein sequenceShow/hide protein sequence
MKSDSSSPWKWNRAITNNFHTKNDDNKFSLPNIFDRNAKEPPALVFEAGGGAGVGCGVGLGFGLVGGIGHGGWPWNHLHLVFGLGLGCGVGIGLGIGQGIGYGFSFDALD
SYFSDHKPNPKHKPPLIQI