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Tan0004440 (gene) of Snake gourd v1 genome

Gene IDTan0004440
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG05:67789564..67791305
RNA-Seq ExpressionTan0004440
SyntenyTan0004440
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045111.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa]2.3e-2454.1Show/hide
Query:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV
        M  +IL QMLHCT +K+IW  L   ++SR LA+ M+ K+ L N KKG +S  EYF KI++CVDA   + KPIS +DHI+Y+L+ LG  Y+SMI VIS + 
Subjt:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV

Query:  FYESVQDVMTLLLTHGNRIESK
           SVQDVM+LLLT  ++IESK
Subjt:  FYESVQDVMTLLLTHGNRIESK
KAA0046195.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa]2.1e-2247.14Show/hide
Query:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV
        M+ +IL QMLH T +K+IW  L   ++SR LA+ M+ K+ L N KKG +S  EYF KI++CVDA   + KPIS +DHI+Y+L+ LG  Y+S+I +IS + 
Subjt:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV

Query:  FYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQNR
           SVQD M+LLLT  ++IESK I    +L + ++ T  R
Subjt:  FYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQNR
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.0e-2450Show/hide
Query:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV
        M+ EIL QMLHC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +   EYF KI +CVDA   + KP+S +DHI+Y+L+ LG  Y+SMI VIS + 
Subjt:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV

Query:  FYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQ
           SVQ+VM+LLLT  ++ ESK I     L S +++TQ
Subjt:  FYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQ
KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]1.9e-2350.81Show/hide
Query:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV
        M+ EIL QM+HC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +S  EYF KI++CVDA   + KP+S +DHI+Y+L  LG  Y+SMI +IS + 
Subjt:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV

Query:  FYESVQDVMTLLLTHGNRIESKTI
           S+Q+VM+LLLT  ++ ESK I
Subjt:  FYESVQDVMTLLLTHGNRIESKTI
TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.0e-2450Show/hide
Query:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV
        M+ EIL QMLHC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +   EYF KI +CVDA   + KP+S +DHI+Y+L+ LG  Y+SMI VIS + 
Subjt:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV

Query:  FYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQ
           SVQ+VM+LLLT  ++ ESK I     L S +++TQ
Subjt:  FYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQ
TrEMBL top hitse value%identityAlignment
A0A5A7TUB3 Putative glutathione S-transferase isoform X11.1e-2454.1Show/hide
Query:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV
        M  +IL QMLHCT +K+IW  L   ++SR LA+ M+ K+ L N KKG +S  EYF KI++CVDA   + KPIS +DHI+Y+L+ LG  Y+SMI VIS + 
Subjt:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV

Query:  FYESVQDVMTLLLTHGNRIESK
           SVQDVM+LLLT  ++IESK
Subjt:  FYESVQDVMTLLLTHGNRIESK
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-2450Show/hide
Query:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV
        M+ EIL QMLHC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +   EYF KI +CVDA   + KP+S +DHI+Y+L+ LG  Y+SMI VIS + 
Subjt:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV

Query:  FYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQ
           SVQ+VM+LLLT  ++ ESK I     L S +++TQ
Subjt:  FYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQ
A0A5A7UB21 Keratin, type II cytoskeletal 1-like9.3e-2450.81Show/hide
Query:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV
        M+ EIL QM+HC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +S  EYF KI++CVDA   + KP+S +DHI+Y+L  LG  Y+SMI +IS + 
Subjt:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV

Query:  FYESVQDVMTLLLTHGNRIESKTI
           S+Q+VM+LLLT  ++ ESK I
Subjt:  FYESVQDVMTLLLTHGNRIESKTI
A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-2450Show/hide
Query:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV
        M+ EIL QMLHC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +   EYF KI +CVDA   + KP+S +DHI+Y+L+ LG  Y+SMI VIS + 
Subjt:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV

Query:  FYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQ
           SVQ+VM+LLLT  ++ ESK I     L S +++TQ
Subjt:  FYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQ
A0A5D3CRZ7 Putative Ty1-copia-like retrotransposon1.0e-2247.14Show/hide
Query:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV
        M+ +IL QMLH T +K+IW  L   ++SR LA+ M+ K+ L N KKG +S  EYF KI++CVDA   + KPIS +DHI+Y+L+ LG  Y+S+I +IS + 
Subjt:  MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKV

Query:  FYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQNR
           SVQD M+LLLT  ++IESK I    +L + ++ T  R
Subjt:  FYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQNR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)2.3e-0627.36Show/hide
Query:  SKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLT
        S+ IW  +   F +   A+ +++ S L+    G +   +Y+ K+KK  D+   V  P++  + +MYVL+ L P ++++I VI  +  + S  D  T+L  
Subjt:  SKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLT

Query:  HGNRIE
          +R++
Subjt:  HGNRIE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGGAGAGATATTAGAACAGATGCTTCACTGTACGTATTCTAAGAAAATTTGGTCTTGCTTACTTCAAAATTTCAACTCTAGAAACTTAGCTCAGGTAATGAAGAT
GAAATCGACTTTACAAAATTTTAAGAAAGGAGGTTTATCTTCGAATGAATATTTTTCAAAAATTAAGAAGTGTGTAGATGCAGTAGGCAAGCCTATATCGATTGAAGATC
ATATCATGTACGTTTTATCTAGTCTTGGTCCTGGATATGAGTCAATGATTTATGTTATTTCTGTTAAAGTTTTTTATGAAAGTGTGCAAGATGTGATGACTCTTCTTCTT
ACTCATGGGAATCGGATAGAAAGTAAAACAATTGACATATATGGTACTTTGTCGTCAACACATCTTTTGACTCAAAATCGGTTGAGGACACTCTAA
mRNA sequenceShow/hide mRNA sequence
TACAAATCAACAAAATTCCCTCTGTTCATACTTGCTTTTCTTCTCCCTCTCTGTATACTTTATTTTCTTCATATCTGATGTTATGGTATCAGAGACCTAGTCTTGCGACT
TGTTGGTTGATCGATGGAGACGTCTGAAGTAAATTCTGATTTGTTAAAAAATAATCAGGTGAGAACTCAGAGCCACTTCCTAAACTCTTACAAGTAAGTGAGAACTTTAC
TATTATTAGTAAACCGAATCCTGTTTATGGTTCAATGGAAAAGACGACAAATTAATTTACTCTTGGTTACTTCACTATATGACAGGAGAGATATTAGAACAGATGCTTCA
CTGTACGTATTCTAAGAAAATTTGGTCTTGCTTACTTCAAAATTTCAACTCTAGAAACTTAGCTCAGGTAATGAAGATGAAATCGACTTTACAAAATTTTAAGAAAGGAG
GTTTATCTTCGAATGAATATTTTTCAAAAATTAAGAAGTGTGTAGATGCAGTAGGCAAGCCTATATCGATTGAAGATCATATCATGTACGTTTTATCTAGTCTTGGTCCT
GGATATGAGTCAATGATTTATGTTATTTCTGTTAAAGTTTTTTATGAAAGTGTGCAAGATGTGATGACTCTTCTTCTTACTCATGGGAATCGGATAGAAAGTAAAACAAT
TGACATATATGGTACTTTGTCGTCAACACATCTTTTGACTCAAAATCGGTTGAGGACACTCTAATATTAACAGAGGAGGAAGATCTTCATGGAACAATAGGAACAAACTA
CAGTGCCAACTTTGTAATAAGTTTGGCCACACATCAATCAAATGCTACTCACATTATGGTCCTCCTTAATTGAACACTGTCAATCAGAATAATATTCCTTCATTTGGTAA
TTTTGGGTCGAATAAATTTTCTCCCTATGGTACTCAATCTTCCCCAATAGCTGCTATGGTTACCACACCCAATTTTAATCAGGATTGCAACTGGTATCCCGACTCTGGTG
CAACAAATCATCCCACAAATAACTTTGAAAATCTTTCTGCAAGCTCAGAGTACCTTGGCATGGACATGTTGGGAATGGAGCAAGGTACAAAGCATAAATAAGACAATTGG
AGACATTTTAGATCACTCGGGATCGAATCGAGGCTTTTTAAACTAGTAGACCTGAGATGATGGCGTTGCAACGTCGAGCTTGCTGTTTTTGTGCATAGAAGGTGTTGGGA
TATGTGCCATAAAACTTATGTAATGTTGATGAAATAAATAAAGAGTTATTCATTTTGATAAAATTA
Protein sequenceShow/hide protein sequence
MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDAVGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLL
THGNRIESKTIDIYGTLSSTHLLTQNRLRTL