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Tan0004447 (gene) of Snake gourd v1 genome

Gene IDTan0004447
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionVQ domain-containing protein
Genome locationLG08:3577524..3577978
RNA-Seq ExpressionTan0004447
SyntenyTan0004447
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]5.9e-3562.33Show/hide
Query:  MENFRSLIPNHLLHQKISQTPNKAT---MENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPPPP--------MDP
        MEN  + +P    H+K+SQ  NK T    +NKPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHS D  ANF QS Q+ FNH  YPPPP         DP
Subjt:  MENFRSLIPNHLLHQKISQTPNKAT---MENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPPPP--------MDP

Query:  KDSYGSVSGDVYDPTGV---GEGRDWRGEMEGSFSGFQA-SYVDIW
        +D YGS SGDV     +    EGR WRGEMEGSFSGFQA S V+IW
Subjt:  KDSYGSVSGDVYDPTGV---GEGRDWRGEMEGSFSGFQA-SYVDIW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]8.9e-3164.83Show/hide
Query:  MENFRSLIPNHLLHQKISQTPNKATM--ENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPPPP-------MDPKD
        MENF +L P++  H+K+SQ  NKAT+  +NKPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHS D   +  QS Q+ FNH+ YPPPP        DPKD
Subjt:  MENFRSLIPNHLLHQKISQTPNKATM--ENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPPPP-------MDPKD

Query:  SYG-SVSGDV-YDPTGVG-EGRDWRGEME-GSFSGFQA-SYVDIW
         YG S SGDV +D    G EGR WRGEME GSFSGFQA S V+IW
Subjt:  SYG-SVSGDV-YDPTGVG-EGRDWRGEME-GSFSGFQA-SYVDIW

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]9.8e-3061.03Show/hide
Query:  MENFRSLIPNHLLHQKISQTPNKATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPP----PPMDPKDSYGSV
        MEN +SL PNHL H+K+  +  +ATM NKPIKVKYIS+PMMVKA+NE EFRAIVQKLTGQHSADD   F +S QE FNH   PP       D KD Y  V
Subjt:  MENFRSLIPNHLLHQKISQTPNKATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPP----PPMDPKDSYGSV

Query:  SGDVYDPTGVGEGRDWRGEMEGSFSGFQASYVDIWR
        S D YDP  V       GEM+ S  GFQASYVD+WR
Subjt:  SGDVYDPTGVGEGRDWRGEMEGSFSGFQASYVDIWR

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]3.1e-3162.5Show/hide
Query:  MENFRSLIPNHLLHQKISQTPNKATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPP----PPMDPKDSYGSV
        MEN +SL PNHL H+K+  +  +ATM NKPIKVKYIS+PMMVKANNE EFRAIVQKLTGQHSADD   F +S QE FNH   PP       D KD Y  V
Subjt:  MENFRSLIPNHLLHQKISQTPNKATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPP----PPMDPKDSYGSV

Query:  SGDVYDPTGVGEGRDWRGEMEGSFSGFQASYVDIWR
        S D YDP GV       GEM+ S  GFQASYVD+WR
Subjt:  SGDVYDPTGVGEGRDWRGEMEGSFSGFQASYVDIWR

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]8.1e-2463.39Show/hide
Query:  ENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPP------PPMDPKDSYGSVSGDVYDPTGVGEGRDWRGEMEGSF
        +NKPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHS   H  F QS+++ FN + YPP      P  DPKD Y S SGDV          DW+GEMEGSF
Subjt:  ENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPP------PPMDPKDSYGSVSGDVYDPTGVGEGRDWRGEMEGSF

Query:  SGFQA-SYVDIW
        SGFQA S V+ W
Subjt:  SGFQA-SYVDIW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein4.3e-3164.83Show/hide
Query:  MENFRSLIPNHLLHQKISQTPNKATM--ENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPPPP-------MDPKD
        MENF +L P++  H+K+SQ  NKAT+  +NKPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHS D   +  QS Q+ FNH+ YPPPP        DPKD
Subjt:  MENFRSLIPNHLLHQKISQTPNKATM--ENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPPPP-------MDPKD

Query:  SYG-SVSGDV-YDPTGVG-EGRDWRGEME-GSFSGFQA-SYVDIW
         YG S SGDV +D    G EGR WRGEME GSFSGFQA S V+IW
Subjt:  SYG-SVSGDV-YDPTGVG-EGRDWRGEME-GSFSGFQA-SYVDIW

A0A5A7VDH6 VQ motif-containing protein2.9e-3562.33Show/hide
Query:  MENFRSLIPNHLLHQKISQTPNKAT---MENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPPPP--------MDP
        MEN  + +P    H+K+SQ  NK T    +NKPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHS D  ANF QS Q+ FNH  YPPPP         DP
Subjt:  MENFRSLIPNHLLHQKISQTPNKAT---MENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPPPP--------MDP

Query:  KDSYGSVSGDVYDPTGV---GEGRDWRGEMEGSFSGFQA-SYVDIW
        +D YGS SGDV     +    EGR WRGEMEGSFSGFQA S V+IW
Subjt:  KDSYGSVSGDVYDPTGV---GEGRDWRGEMEGSFSGFQA-SYVDIW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like5.5e-1857.8Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQ-SSQEYFNHLLYPPPP-----MDPKDSYGSVSGDVYDPTGVGEGRDWRGEMEGSFSG
        KPIKVKYISNPMMVKAN+ESEFR IVQ+LTGQ+S DD         +E  NH  YPPPP      DPK  YG VSG V +   +GEG   + EM+G FSG
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQ-SSQEYFNHLLYPPPP-----MDPKDSYGSVSGDVYDPTGVGEGRDWRGEMEGSFSG

Query:  FQASYVDIW
        FQAS V+ +
Subjt:  FQASYVDIW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like1.5e-3162.5Show/hide
Query:  MENFRSLIPNHLLHQKISQTPNKATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPP----PPMDPKDSYGSV
        MEN +SL PNHL H+K+  +  +ATM NKPIKVKYIS+PMMVKANNE EFRAIVQKLTGQHSADD   F +S QE FNH   PP       D KD Y  V
Subjt:  MENFRSLIPNHLLHQKISQTPNKATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPP----PPMDPKDSYGSV

Query:  SGDVYDPTGVGEGRDWRGEMEGSFSGFQASYVDIWR
        S D YDP GV       GEM+ S  GFQASYVD+WR
Subjt:  SGDVYDPTGVGEGRDWRGEMEGSFSGFQASYVDIWR

A0A7N2L612 VQ domain-containing protein5.1e-0855.56Show/hide
Query:  NHLLH-QKISQTPNKAT-MENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNH
        NH LH Q   Q P+  T ++ +P+K+KYIS+PM+VKA N SEFRAIVQ+LTGQHS +D ++ HQS     NH
Subjt:  NHLLH-QKISQTPNKAT-MENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNH

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic1.5e-0435.71Show/hide
Query:  KATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSAD--------DHANFHQSSQEYFNHLLYPPPPMDPKDSYGSVSGDVYDPTGVGEGRDWRG
        K+T  +KPIKV+YISNPM V+    S+FR +VQ+LTGQ +AD           + H+  +   N        ++P D  G V G+ Y P  + E      
Subjt:  KATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSAD--------DHANFHQSSQEYFNHLLYPPPPMDPKDSYGSVSGDVYDPTGVGEGRDWRG

Query:  EMEGSFSGFQAS
        +M    SGF +S
Subjt:  EMEGSFSGFQAS

Q9LDH1 Sigma factor binding protein 1, chloroplastic3.5e-0637.07Show/hide
Query:  QKISQTPNKATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSAD--DHANFHQSSQEYFNHLLYPP-----PPMDPKDSYGSVSGDVYDPTGVG
        +K  +   K T  NKPIKV+YISNPM V+    S+FR +VQ+LTGQ + D      +  SS +   H L PP     P +  ++ +G    D Y+P    
Subjt:  QKISQTPNKATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSAD--DHANFHQSSQEYFNHLLYPP-----PPMDPKDSYGSVSGDVYDPTGVG

Query:  EGRDWRGEMEGSFSGF
        E      +M   FSGF
Subjt:  EGRDWRGEMEGSFSGF

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.1e-0535.71Show/hide
Query:  KATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSAD--------DHANFHQSSQEYFNHLLYPPPPMDPKDSYGSVSGDVYDPTGVGEGRDWRG
        K+T  +KPIKV+YISNPM V+    S+FR +VQ+LTGQ +AD           + H+  +   N        ++P D  G V G+ Y P  + E      
Subjt:  KATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSAD--------DHANFHQSSQEYFNHLLYPPPPMDPKDSYGSVSGDVYDPTGVGEGRDWRG

Query:  EMEGSFSGFQAS
        +M    SGF +S
Subjt:  EMEGSFSGFQAS

AT3G56710.1 sigma factor binding protein 12.5e-0737.07Show/hide
Query:  QKISQTPNKATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSAD--DHANFHQSSQEYFNHLLYPP-----PPMDPKDSYGSVSGDVYDPTGVG
        +K  +   K T  NKPIKV+YISNPM V+    S+FR +VQ+LTGQ + D      +  SS +   H L PP     P +  ++ +G    D Y+P    
Subjt:  QKISQTPNKATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSAD--DHANFHQSSQEYFNHLLYPP-----PPMDPKDSYGSVSGDVYDPTGVG

Query:  EGRDWRGEMEGSFSGF
        E      +M   FSGF
Subjt:  EGRDWRGEMEGSFSGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATTTTAGAAGCCTTATTCCTAATCATCTTCTTCACCAAAAAATTAGCCAAACTCCCAACAAAGCAACAATGGAGAACAAGCCCATCAAAGTCAAGTACATTTC
CAATCCTATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCAGAAGCTCACTGGCCAGCACTCCGCTGATGATCATGCTAATTTTCATCAATCATCTC
AAGAATATTTCAACCATCTTCTTTATCCGCCGCCCCCTATGGACCCTAAGGATTCTTATGGTTCGGTTTCCGGTGATGTCTACGATCCGACCGGGGTCGGCGAAGGCCGT
GACTGGCGAGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTATGTTGATATATGGCGATGA
mRNA sequenceShow/hide mRNA sequence
TTTCCCTCTTTCTCTTATTATTATTATTATTATTATTATTTTCTCTCTATTTCTCAATGGAGAATTTTAGAAGCCTTATTCCTAATCATCTTCTTCACCAAAAAATTAGC
CAAACTCCCAACAAAGCAACAATGGAGAACAAGCCCATCAAAGTCAAGTACATTTCCAATCCTATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCA
GAAGCTCACTGGCCAGCACTCCGCTGATGATCATGCTAATTTTCATCAATCATCTCAAGAATATTTCAACCATCTTCTTTATCCGCCGCCCCCTATGGACCCTAAGGATT
CTTATGGTTCGGTTTCCGGTGATGTCTACGATCCGACCGGGGTCGGCGAAGGCCGTGACTGGCGAGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTATGTT
GATATATGGCGATGA
Protein sequenceShow/hide protein sequence
MENFRSLIPNHLLHQKISQTPNKATMENKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDHANFHQSSQEYFNHLLYPPPPMDPKDSYGSVSGDVYDPTGVGEGR
DWRGEMEGSFSGFQASYVDIWR