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Tan0004497 (gene) of Snake gourd v1 genome

Gene IDTan0004497
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationLG01:60455851..60456567
RNA-Seq ExpressionTan0004497
SyntenyTan0004497
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN74381.1 hypothetical protein VITISV_007944 [Vitis vinifera]3.5e-4543.33Show/hide
Query:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG
        MA  E  LSIQ+FHQC+SL+SIKLN+SN LLW+SQVLPL+R                                T  +NDGLL SWLLG++ E+V+ L++G
Subjt:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG

Query:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA
        T TA                             +KG+ +L++Y+R+FK +CD LAA+++P++D  K F +++GLG KY +FR  MLSKPPYPSYNQF+LA
Subjt:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA

Query:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNF
        L+ H+Q+I  E EE K + +N  QA++  RGRG  RG  F
Subjt:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNF

RVW19921.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.2e-4543.78Show/hide
Query:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG
        MA  E  LSIQ+FHQC+SL+SIKLN+SN LLW+SQVLPL+R                                T  +NDGLL SWLLG++ E+V+ L++G
Subjt:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG

Query:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA
        T TA                             +KG+ +L++Y+R+FK +CD LAA+++P++D  KVF +++GLG KY +FR  MLSKPPYPSYNQF+LA
Subjt:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA

Query:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRG---GG----RGRNFPP
        L+ H+Q+I  E EE K + +N  QA++  RGRG   GG    RGR F P
Subjt:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRG---GG----RGRNFPP

RVW43526.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]9.1e-4643.75Show/hide
Query:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG
        MA  E  LSIQ+FHQC+SL+SIKLN+SN LLW+SQVLPL+R                                T  +NDGLL SWLLG++ E+V+ L++G
Subjt:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG

Query:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA
        T TA                             +KG+ +L++Y+R+FK +CD LAA+++P++D  KVF +++GLG KY +FR  MLSKPPYPSYNQF+LA
Subjt:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA

Query:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNF
        L+ H+Q+I  E EE K + +N  QA++  RGRG  RG  F
Subjt:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNF

RVW93768.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.4e-4641.8Show/hide
Query:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG
        MA  E  LSIQ+FHQC+SL+SIKLN+SN LLW+SQVLPL+R                                T  +NDGLL SWLLG++ ++V+ L++G
Subjt:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG

Query:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA
        T TA                             +KG+ +L++Y+R+FK +CD LAA+++P++D  KVF +++GLG KY +FR  MLSKPPYPSYNQF+LA
Subjt:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA

Query:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNFPPKEEDSITVGILRTN
        L+ H+Q+I +E EE K + +N  QA++  RGRG  RG  F  K       G    N
Subjt:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNFPPKEEDSITVGILRTN

XP_022154021.1 uncharacterized protein LOC111021379 [Momordica charantia]5.9e-6151.49Show/hide
Query:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIRTM--------------------------------INNDGLLISWLLGIIAEDVLALIEG
        MA  E  L++QSFHQC+SLIS+KLN SNYLLWKSQVLPLIRT+                                INNDGLL SWLLGIIAEDVL L+EG
Subjt:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIRTM--------------------------------INNDGLLISWLLGIIAEDVLALIEG

Query:  TNTAKQ----------------------------KGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA
        T TAK+                            KGSL++++YIRKFK+LCD+L AMK+PL+D +KVFH++RGLG KYK+FRT MLSK PYPSYNQF+LA
Subjt:  TNTAKQ----------------------------KGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA

Query:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNFP-----------PKEEDSITVGILRTNM
        LKAHDQ ++ +EEEE+S+Q+N+NQAF+++RGR  GRGR F            PK + S   GI+   M
Subjt:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNFP-----------PKEEDSITVGILRTNM

TrEMBL top hitse value%identityAlignment
A0A438C9J9 Retrovirus-related Pol polyprotein from transposon RE15.8e-4643.78Show/hide
Query:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG
        MA  E  LSIQ+FHQC+SL+SIKLN+SN LLW+SQVLPL+R                                T  +NDGLL SWLLG++ E+V+ L++G
Subjt:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG

Query:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA
        T TA                             +KG+ +L++Y+R+FK +CD LAA+++P++D  KVF +++GLG KY +FR  MLSKPPYPSYNQF+LA
Subjt:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA

Query:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRG---GG----RGRNFPP
        L+ H+Q+I  E EE K + +N  QA++  RGRG   GG    RGR F P
Subjt:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRG---GG----RGRNFPP

A0A438E6Z5 Retrovirus-related Pol polyprotein from transposon TNT 1-944.4e-4643.75Show/hide
Query:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG
        MA  E  LSIQ+FHQC+SL+SIKLN+SN LLW+SQVLPL+R                                T  +NDGLL SWLLG++ E+V+ L++G
Subjt:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG

Query:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA
        T TA                             +KG+ +L++Y+R+FK +CD LAA+++P++D  KVF +++GLG KY +FR  MLSKPPYPSYNQF+LA
Subjt:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA

Query:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNF
        L+ H+Q+I  E EE K + +N  QA++  RGRG  RG  F
Subjt:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNF

A0A438IAM2 Retrovirus-related Pol polyprotein from transposon RE11.2e-4641.8Show/hide
Query:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG
        MA  E  LSIQ+FHQC+SL+SIKLN+SN LLW+SQVLPL+R                                T  +NDGLL SWLLG++ ++V+ L++G
Subjt:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG

Query:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA
        T TA                             +KG+ +L++Y+R+FK +CD LAA+++P++D  KVF +++GLG KY +FR  MLSKPPYPSYNQF+LA
Subjt:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA

Query:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNFPPKEEDSITVGILRTN
        L+ H+Q+I +E EE K + +N  QA++  RGRG  RG  F  K       G    N
Subjt:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNFPPKEEDSITVGILRTN

A0A6J1DMG5 uncharacterized protein LOC1110213792.8e-6151.49Show/hide
Query:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIRTM--------------------------------INNDGLLISWLLGIIAEDVLALIEG
        MA  E  L++QSFHQC+SLIS+KLN SNYLLWKSQVLPLIRT+                                INNDGLL SWLLGIIAEDVL L+EG
Subjt:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIRTM--------------------------------INNDGLLISWLLGIIAEDVLALIEG

Query:  TNTAKQ----------------------------KGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA
        T TAK+                            KGSL++++YIRKFK+LCD+L AMK+PL+D +KVFH++RGLG KYK+FRT MLSK PYPSYNQF+LA
Subjt:  TNTAKQ----------------------------KGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA

Query:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNFP-----------PKEEDSITVGILRTNM
        LKAHDQ ++ +EEEE+S+Q+N+NQAF+++RGR  GRGR F            PK + S   GI+   M
Subjt:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNFP-----------PKEEDSITVGILRTNM

A5BC00 Uncharacterized protein1.7e-4543.33Show/hide
Query:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG
        MA  E  LSIQ+FHQC+SL+SIKLN+SN LLW+SQVLPL+R                                T  +NDGLL SWLLG++ E+V+ L++G
Subjt:  MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIR--------------------------------TMINNDGLLISWLLGIIAEDVLALIEG

Query:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA
        T TA                             +KG+ +L++Y+R+FK +CD LAA+++P++D  K F +++GLG KY +FR  MLSKPPYPSYNQF+LA
Subjt:  TNTA----------------------------KQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHISRGLGNKYKEFRTTMLSKPPYPSYNQFILA

Query:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNF
        L+ H+Q+I  E EE K + +N  QA++  RGRG  RG  F
Subjt:  LKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAGCAAGAAACTCCCTTGAGCATCCAATCATTTCATCAATGTGCAAGCCTCATATCCATAAAACTGAATATATCCAATTACTTACTCTGGAAATCACAAGTGTT
GCCACTCATAAGGACAATGATCAACAATGATGGCCTCCTCATCTCATGGCTTCTTGGAATCATTGCTGAAGATGTGTTGGCTTTGATTGAAGGTACTAATACTGCAAAAC
AAAAAGGATCATTAACTCTAGAGGATTATATTAGAAAGTTTAAGAGTTTGTGTGACAAGCTTGCAGCAATGAAAAGACCTTTGAATGATACATCTAAGGTTTTTCATATA
TCAAGAGGACTAGGGAACAAATACAAGGAGTTCAGAACAACCATGTTATCAAAACCTCCTTATCCTTCATACAACCAGTTCATCCTTGCCCTGAAAGCCCATGATCAACT
AATCTCAGTTGAGGAAGAAGAGGAAAAGAGCAATCAACTAAATATCAATCAAGCCTTTTATGCTCATCGAGGACGAGGCGGAGGAAGAGGAAGAAATTTTCCTCCAAAGG
AAGAGGATTCTATCACAGTAGGAATCCTAAGGACCAACATGGTATGCACGAAGGTAATTGTCCTCCTTATAAACAAAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAGCAAGAAACTCCCTTGAGCATCCAATCATTTCATCAATGTGCAAGCCTCATATCCATAAAACTGAATATATCCAATTACTTACTCTGGAAATCACAAGTGTT
GCCACTCATAAGGACAATGATCAACAATGATGGCCTCCTCATCTCATGGCTTCTTGGAATCATTGCTGAAGATGTGTTGGCTTTGATTGAAGGTACTAATACTGCAAAAC
AAAAAGGATCATTAACTCTAGAGGATTATATTAGAAAGTTTAAGAGTTTGTGTGACAAGCTTGCAGCAATGAAAAGACCTTTGAATGATACATCTAAGGTTTTTCATATA
TCAAGAGGACTAGGGAACAAATACAAGGAGTTCAGAACAACCATGTTATCAAAACCTCCTTATCCTTCATACAACCAGTTCATCCTTGCCCTGAAAGCCCATGATCAACT
AATCTCAGTTGAGGAAGAAGAGGAAAAGAGCAATCAACTAAATATCAATCAAGCCTTTTATGCTCATCGAGGACGAGGCGGAGGAAGAGGAAGAAATTTTCCTCCAAAGG
AAGAGGATTCTATCACAGTAGGAATCCTAAGGACCAACATGGTATGCACGAAGGTAATTGTCCTCCTTATAAACAAAAATTAA
Protein sequenceShow/hide protein sequence
MAKQETPLSIQSFHQCASLISIKLNISNYLLWKSQVLPLIRTMINNDGLLISWLLGIIAEDVLALIEGTNTAKQKGSLTLEDYIRKFKSLCDKLAAMKRPLNDTSKVFHI
SRGLGNKYKEFRTTMLSKPPYPSYNQFILALKAHDQLISVEEEEEKSNQLNINQAFYAHRGRGGGRGRNFPPKEEDSITVGILRTNMVCTKVIVLLINKN