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Tan0004500 (gene) of Snake gourd v1 genome

Gene IDTan0004500
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationLG11:63153935..63154213
RNA-Seq ExpressionTan0004500
SyntenyTan0004500
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026280.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.0e-1064.06Show/hide
Query:  GREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP
        G   S+ ESS P  E N+EEQ L R+ QRL+  I  AQ+  EKKYGIERLKALGATTF GTTNP
Subjt:  GREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.4e-1156.32Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP
        M RG  R     +T         G   S+ ESS P  E NMEEQ L R+ QRL+  I SAQ+ PEKKYGIERLKALGATTF GTTNP
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.3e-1155.17Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP
        M RG  R     E          G   S+ ESS P+ E N+EEQ L R+ QRLV  I SAQ+ PEKKYG ERLKALGATTF GTTNP
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]9.3e-1155.17Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP
        M RG  R     E          G   S+ ESS P+ E N+EEQ L R+ QRLV  I SAQ+ PEKKYG ERLKALGATTF GTTNP
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP

WP_217833179.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]3.6e-1575.41Show/hide
Query:  VSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP
        +SEGESSHPQ EVN+EEQ  TRI QRL  SIGS ++ PEKKY IERLKALGATTFEGT +P
Subjt:  VSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein2.9e-1064.06Show/hide
Query:  GREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP
        G   S+ ESS P  E N+EEQ L R+ QRL+  I  AQ+  EKKYGIERLKALGATTF GTTNP
Subjt:  GREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP

A0A5A7T1M0 Reverse transcriptase4.5e-1155.17Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP
        M RG  R     E          G   S+ ESS P+ E N+EEQ L R+ QRLV  I SAQ+ PEKKYG ERLKALGATTF GTTNP
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP

A0A5A7U067 Retrotrans_gag domain-containing protein2.3e-0752.33Show/hide
Query:  MARGGKRGRQV-ETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTN
        M RG  R   V E          G E S+ ESS    EVN+EEQ L R+ Q LV  I SAQ+  EK + IERLKALGATTF GTTN
Subjt:  MARGGKRGRQV-ETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTN

A0A5D3BB91 Reverse transcriptase4.5e-1155.17Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP
        M RG  R     E          G   S+ ESS P+ E N+EEQ L R+ QRLV  I SAQ+ PEKKYG ERLKALGATTF GTTNP
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP

A0A5D3DES5 DNA/RNA polymerases superfamily protein1.2e-1156.32Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP
        M RG  R     +T         G   S+ ESS P  E NMEEQ L R+ QRL+  I SAQ+ PEKKYGIERLKALGATTF GTTNP
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAACATGGAGGAACAGAGCCTTACGCGGATAACTCAAAGATTAGTTGAAAGTATTGGATCAGCACAAGCATATCCAGAAAAGAAGTATGGCATTGAAAGACTGAAAG
CCTTAGGTGCAACAACATTTGAAGGCACGACAAATCCACCGATCTTGAGGTTTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAACATGGAGGAACAGAGCCTTACGCGGATAACTCAAAGATTAGTTGAAAGTATTGGATCAGCACAAGCATATCCAGAAAAGAAGTATGGCATTGAAAGACTGAAAG
CCTTAGGTGCAACAACATTTGAAGGCACGACAAATCCACCGATCTTGAGGTTTGGTTAA
Protein sequenceShow/hide protein sequence
MARGGKRGRQVETGTQEATGDRGREVSEGESSHPQQEVNMEEQSLTRITQRLVESIGSAQAYPEKKYGIERLKALGATTFEGTTNPPILRFG