CuGenDBv2

Gene ID	Tan0004562
Organism	Trichosanthes anguina (Snake gourd v1)
Description	short integuments 2, mitochondrial
Genome location	LG03:52975628..52976054
RNA-Seq Expression	Tan0004562
Synteny	Tan0004562
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6595673.1 Short integuments 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

5.9e-29

86.25

Show/hide

Query:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLN
        DLVT++QRALY ++S FDGNVE+ENDLESLIE+QF+ALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVP+ N
Subjt:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLN

XP_022156767.1 short integuments 2, mitochondrial isoform X1 [Momordica charantia]

1.0e-33

90.59

Show/hide

Query:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSSPLN
        DLVTE+QRALYTS+SEFDGNVE+ENDLESLIELQF+ALQKAMKIPHKAAE RLKVSKKLLTLFRAGKLGPFILDDVP + SSPLN
Subjt:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSSPLN

XP_022156770.1 short integuments 2, mitochondrial isoform X2 [Momordica charantia]

1.0e-33

90.59

Show/hide

Query:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSSPLN
        DLVTE+QRALYTS+SEFDGNVE+ENDLESLIELQF+ALQKAMKIPHKAAE RLKVSKKLLTLFRAGKLGPFILDDVP + SSPLN
Subjt:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSSPLN

XP_038883550.1 short integuments 2, mitochondrial isoform X1 [Benincasa hispida]

3.1e-30

92.21

Show/hide

Query:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVP
        DLVTE+QRALYT+VSEFDGNVE+ENDLESLIE+QF+ALQKAMKIPHKAAEARL+VSKKLLTLFRAGKLGPFILDDVP
Subjt:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVP

XP_038883551.1 short integuments 2, mitochondrial isoform X2 [Benincasa hispida]

3.1e-30

92.21

Show/hide

Query:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVP
        DLVTE+QRALYT+VSEFDGNVE+ENDLESLIE+QF+ALQKAMKIPHKAAEARL+VSKKLLTLFRAGKLGPFILDDVP
Subjt:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVP

TrEMBL top hits

e value

%identity

Alignment

A0A059A291 Uncharacterized protein (Fragment)

6.0e-27

76.83

Show/hide

Query:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSS
        D+VTE+QRALY S+SEFDGNVE ENDLE LIE QF+ALQKA++IPHKA+EAR+ VSKK LTLFR GKLGPFILDDVP +N++
Subjt:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSS

A0A6J1DR97 short integuments 2, mitochondrial isoform X2

5.1e-34

90.59

Show/hide

Query:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSSPLN
        DLVTE+QRALYTS+SEFDGNVE+ENDLESLIELQF+ALQKAMKIPHKAAE RLKVSKKLLTLFRAGKLGPFILDDVP + SSPLN
Subjt:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSSPLN

A0A6J1DRI9 short integuments 2, mitochondrial isoform X1

5.1e-34

90.59

Show/hide

Query:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSSPLN
        DLVTE+QRALYTS+SEFDGNVE+ENDLESLIELQF+ALQKAMKIPHKAAE RLKVSKKLLTLFRAGKLGPFILDDVP + SSPLN
Subjt:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSSPLN

A0A6J1EAB7 short integuments 2, mitochondrial

4.9e-29

86.25

Show/hide

Query:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLN
        DLVT++QRALY + S FDGNVE+ENDLESLIE+QF+ALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVP+ N
Subjt:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLN

A0A6J1HMR9 short integuments 2, mitochondrial

6.4e-29

89.61

Show/hide

Query:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVP
        DLVT++QRALY  +S FDGNVE+ENDLESLIELQF+ALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVP
Subjt:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVP

SwissProt top hits

e value

%identity

Alignment

O82497 DAR GTPase 2, mitochondrial

1.5e-11

42.68

Show/hide

Query:  LVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAE-ARLKVSKKLLTLFRAGKLGPFILDDVPNLNSS
        +V +++R LY ++S FDGN+E+E  + +LIE QF AL+  +++P +A+E A L+V+ K+L L+R G+LG + L+ V  L  S
Subjt:  LVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAE-ARLKVSKKLLTLFRAGKLGPFILDDVPNLNSS

Q8L607 Short integuments 2, mitochondrial

2.2e-26

67.06

Show/hide

Query:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSSPLN
        D+++E+QR+LY ++SEFDG+ E+ENDLE LIE QF+ LQKA+KIPHKA+EARL VSKK LTLFR G+LGPFILDDVP   +   N
Subjt:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSSPLN

Arabidopsis top hits

e value

%identity

Alignment

AT2G41670.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

1.6e-27

67.06

Show/hide

Query:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSSPLN
        D+++E+QR+LY ++SEFDG+ E+ENDLE LIE QF+ LQKA+KIPHKA+EARL VSKK LTLFR G+LGPFILDDVP   +   N
Subjt:  DLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPNLNSSPLN

AT4G10650.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

1.1e-12

42.68

Show/hide

Query:  LVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAE-ARLKVSKKLLTLFRAGKLGPFILDDVPNLNSS
        +V +++R LY ++S FDGN+E+E  + +LIE QF AL+  +++P +A+E A L+V+ K+L L+R G+LG + L+ V  L  S
Subjt:  LVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAE-ARLKVSKKLLTLFRAGKLGPFILDDVPNLNSS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGGTGTGTTGGAAGATTGCATGCACACCGATATGTAGCGAAGACAGTCTCTTTTGTCCATCATTAACCTCACTTTTGTTTTACTTTCATTCCTCCCGACGAAAGCG
GGATCTTGTAACAGAAATTCAACGTGCACTCTACACAAGTGTGTCGGAATTTGATGGTAATGTAGAAGAAGAGAATGATTTAGAAAGTCTTATCGAACTGCAGTTTGATG
CATTGCAGAAAGCAATGAAGATACCTCATAAAGCAGCGGAAGCTCGTCTGAAAGTATCAAAGAAACTACTTACTCTATTCAGGGCCGGTAAGCTTGGTCCATTTATCCTT
GATGATGTCCCTAACCTAAATTCTTCACCTTTAAATCCTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVVCWKIACTPICSEDSLFCPSLTSLLFYFHSSRRKRDLVTEIQRALYTSVSEFDGNVEEENDLESLIELQFDALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFIL
DDVPNLNSSPLNP

Tan0004562 (gene) of Snake gourd v1 genome