; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0004564 (gene) of Snake gourd v1 genome

Gene IDTan0004564
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 31 kDa protein
Genome locationLG11:7448967..7453346
RNA-Seq ExpressionTan0004564
SyntenyTan0004564
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0032502 - developmental process (biological process)
GO:0051302 - regulation of cell division (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR003954 - RNA recognition motif domain, eukaryote
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR034219 - ZCRB1, RNA recognition motif
IPR035979 - RNA-binding domain superfamily
IPR044598 - Zinc finger CCHC-type and RNA-binding motif-containing protein 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7016330.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-12389.96Show/hide
Query:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK
        M+R+ KR  NPNSDSDDDETFYYRYPSATSSAPPP SSSQSH SSQ HSHSS+KSGGGSGGLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLK
Subjt:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK

Query:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG
        DRQTRKSRG AF+QFISQDDAVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKR R+GG G
Subjt:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG

Query:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE
        ARHEEDWGSD GEGFEDDNWASVVDGDADQRLLT  ENVVEKKKAKK SYFSDES EDE
Subjt:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE

XP_008456528.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo]3.1e-12892.66Show/hide
Query:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK
        MAR+GK+TNNP SDSD+DETFYYRYPSA SSAPP  SSSQSH SSQ HSHSS+KSGGGSGGLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLK
Subjt:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK

Query:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG
        DRQTRKSRGVAF+QFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGG G
Subjt:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG

Query:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE
        ARHEEDWGSDVGE FEDDNWASVVDGDADQRLLTGGEN+VEKKKAKK SYFSDES ED+
Subjt:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE

XP_022939952.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita moschata]1.3e-12389.96Show/hide
Query:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK
        M+R+ KR  NPNSDSDDDETFYYRYPSATSSAPPP SSSQSH SSQ HSHSS+KSGGGSGGLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLK
Subjt:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK

Query:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG
        DRQTRKSRG AF+QFISQDDAVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKR R+GG G
Subjt:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG

Query:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE
        ARHEEDWGSD GEGFEDDNWASVVDGDADQRLLT  ENVVEKKKAKK SYFSDES EDE
Subjt:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE

XP_022993724.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima]7.9e-12489.96Show/hide
Query:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK
        M+R+GKR  NPNSDSDDDETFYYRYPSATSSAPPP SSSQSH SSQ HSHSS+KSGGGSGGLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLK
Subjt:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK

Query:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG
        DRQTRKSRG AF+QFISQDDAVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKR R+GG G
Subjt:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG

Query:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE
        ARHEEDWGSD GEGFEDD WASVVDGDADQRLLT  ENVVEKKKAKK SYFSDES EDE
Subjt:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE

XP_038883985.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida]1.6e-12993.44Show/hide
Query:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK
        MAR+GKRTNNPNSDS+DDETFYYRYPSA SSAPPP S+SQSH SSQ HSHSS+K  GGSGGLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLK
Subjt:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK

Query:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG
        DRQTRKSRGVAF+QFISQDDAVKAAKQM+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGG G
Subjt:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG

Query:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE
        ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKK SYFSDESDED+
Subjt:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE

TrEMBL top hitse value%identityAlignment
A0A1S3C324 U11/U12 small nuclear ribonucleoprotein 31 kDa protein1.5e-12892.66Show/hide
Query:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK
        MAR+GK+TNNP SDSD+DETFYYRYPSA SSAPP  SSSQSH SSQ HSHSS+KSGGGSGGLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLK
Subjt:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK

Query:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG
        DRQTRKSRGVAF+QFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGG G
Subjt:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG

Query:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE
        ARHEEDWGSDVGE FEDDNWASVVDGDADQRLLTGGEN+VEKKKAKK SYFSDES ED+
Subjt:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE

A0A5A7SYZ1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein1.5e-12892.66Show/hide
Query:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK
        MAR+GK+TNNP SDSD+DETFYYRYPSA SSAPP  SSSQSH SSQ HSHSS+KSGGGSGGLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLK
Subjt:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK

Query:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG
        DRQTRKSRGVAF+QFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGG G
Subjt:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG

Query:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE
        ARHEEDWGSDVGE FEDDNWASVVDGDADQRLLTGGEN+VEKKKAKK SYFSDES ED+
Subjt:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE

A0A6J1BY38 U11/U12 small nuclear ribonucleoprotein 31 kDa protein5.5e-12390.73Show/hide
Query:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK
        MAR+GKRT NPNSDSDDDETFYYRYPSA SSAPPPSSS     SSQ HSHSS KSGGGSGGLVPSKST+YVSN D+SLTNSDLHTLFSTFGKIARVTVLK
Subjt:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK

Query:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG
        DRQTR+SRGVAFIQFISQDDAVKA K+M+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+NQLGPRERPEPKRGRRGG G
Subjt:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG

Query:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE
        ARHEEDWGSD GEGFEDDNWASVVDGDADQRLLTGGENV E+KK KK SYFSDESDEDE
Subjt:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE

A0A6J1FIA0 U11/U12 small nuclear ribonucleoprotein 31 kDa protein6.5e-12489.96Show/hide
Query:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK
        M+R+ KR  NPNSDSDDDETFYYRYPSATSSAPPP SSSQSH SSQ HSHSS+KSGGGSGGLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLK
Subjt:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK

Query:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG
        DRQTRKSRG AF+QFISQDDAVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKR R+GG G
Subjt:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG

Query:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE
        ARHEEDWGSD GEGFEDDNWASVVDGDADQRLLT  ENVVEKKKAKK SYFSDES EDE
Subjt:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE

A0A6J1JX53 U11/U12 small nuclear ribonucleoprotein 31 kDa protein3.8e-12489.96Show/hide
Query:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK
        M+R+GKR  NPNSDSDDDETFYYRYPSATSSAPPP SSSQSH SSQ HSHSS+KSGGGSGGLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLK
Subjt:  MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLK

Query:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG
        DRQTRKSRG AF+QFISQDDAVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKR R+GG G
Subjt:  DRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAG

Query:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE
        ARHEEDWGSD GEGFEDD WASVVDGDADQRLLT  ENVVEKKKAKK SYFSDES EDE
Subjt:  ARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE

SwissProt top hitse value%identityAlignment
Q499V6 Zinc finger CCHC-type and RNA-binding motif-containing protein 13.5e-4247.2Show/hide
Query:  SGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVY
        SGGL PSKST+YVSN  FSLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+ +D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y
Subjt:  SGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVY

Query:  KDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAGARHEEDWGS-DVGEGFEDD------------NWASVVDGDADQRLLTGGENVVE---K
         DKS+CYECG   GHLSY CPKN LG RE P+ K  ++       EE+    +V E   +D              A + +     R  TGG +  +   +
Subjt:  KDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAGARHEEDWGS-DVGEGFEDD------------NWASVVDGDADQRLLTGGENVVE---K

Query:  KKAKKTSYFSDESD
         + KK++YFSDE +
Subjt:  KKAKKTSYFSDESD

Q5SP50 Zinc finger CCHC-type and RNA-binding motif-containing protein 13.9e-4146.98Show/hide
Query:  SGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVY
        SGGL PSKST+YVSN  FSLTNSD+H L S +GK+ +VT++KD+ TR S+GVAF+ F+ ++ A   ++ ++ K L GR++KA+IA DNGRAAEFIRKR Y
Subjt:  SGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVY

Query:  KDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKA-------------
         DKS+CYECG  +GHLSY CPKN LG RE P  K  ++     + EE    D  E  ED    S+    A Q+     E    K+ A             
Subjt:  KDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKA-------------

Query:  ----KKTSYFSDESD
            KK++YFSDE +
Subjt:  ----KKTSYFSDESD

Q8TBF4 Zinc finger CCHC-type and RNA-binding motif-containing protein 13.9e-4148.74Show/hide
Query:  SGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVY
        SGGL PSKST+YVSN  FSLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+ +D A    + ++ K L GRV+KA+IA DNGRAAEFIR+R Y
Subjt:  SGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVY

Query:  KDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDE
         DKS+CYECG   GHLSY CPKN LG RE P+ K  ++       EE+   +  E  ED+     +D  +        +   E+KK K +S     SD+
Subjt:  KDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDE

Q9CAE4 U11/U12 small nuclear ribonucleoprotein 31 kDa protein6.6e-7361.05Show/hide
Query:  KRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTR
        K+    +SD ++D+TFYYRY S   +APPPS+     SSS      SS  GGGSGGL PSKSTLYVSN DFSLTNSD+HTLFSTFGK+ARVTVLKDR TR
Subjt:  KRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTR

Query:  KSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEP--KRGRR-GGAGAR
        +SRGVAF+ ++S++DA KAA+ M  KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGPRERP P  KRGRR    G  
Subjt:  KSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEP--KRGRR-GGAGAR

Query:  HEEDWGSD------VGEGFEDDNWASVVDGDADQRLLTGGENVVE----KKKAKKTSYFSDESDEDE
         E  W +         E FE++NWASVVD +A +RL        E    K+K KK SYFSDESD+++
Subjt:  HEEDWGSD------VGEGFEDDNWASVVDGDADQRLLTGGENVVE----KKKAKKTSYFSDESDEDE

Q9CZ96 Zinc finger CCHC-type and RNA-binding motif-containing protein 11.3e-4146.73Show/hide
Query:  SGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVY
        SGGL PSKST+YVSN  FSLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+ +D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y
Subjt:  SGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVY

Query:  KDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAGARHEEDWGS-DVGEGFEDD------------NWASVVDGDADQRLLTGGENVVE---K
         DKS+CYECG   GHLSY CPKN LG RE P+ K  ++       EE+    +V E   +D              A + +  +  R   GG +  +   +
Subjt:  KDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAGARHEEDWGS-DVGEGFEDD------------NWASVVDGDADQRLLTGGENVVE---K

Query:  KKAKKTSYFSDESD
         + KK++YFSDE +
Subjt:  KKAKKTSYFSDESD

Arabidopsis top hitse value%identityAlignment
AT3G10400.1 RNA recognition motif and CCHC-type zinc finger domains containing protein4.7e-7461.05Show/hide
Query:  KRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTR
        K+    +SD ++D+TFYYRY S   +APPPS+     SSS      SS  GGGSGGL PSKSTLYVSN DFSLTNSD+HTLFSTFGK+ARVTVLKDR TR
Subjt:  KRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTR

Query:  KSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEP--KRGRR-GGAGAR
        +SRGVAF+ ++S++DA KAA+ M  KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGPRERP P  KRGRR    G  
Subjt:  KSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEP--KRGRR-GGAGAR

Query:  HEEDWGSD------VGEGFEDDNWASVVDGDADQRLLTGGENVVE----KKKAKKTSYFSDESDEDE
         E  W +         E FE++NWASVVD +A +RL        E    K+K KK SYFSDESD+++
Subjt:  HEEDWGSD------VGEGFEDDNWASVVDGDADQRLLTGGENVVE----KKKAKKTSYFSDESDEDE

AT3G23830.1 glycine-rich RNA-binding protein 41.9e-1137.78Show/hide
Query:  GGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRA
        G L    S L+V    +   +S L   F++FG++   TV+ DR+T +SRG  F+ F  +D A  A K+M GK LNGR ++  +AT+   A
Subjt:  GGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRA

AT3G23830.2 glycine-rich RNA-binding protein 41.9e-1137.78Show/hide
Query:  GGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRA
        G L    S L+V    +   +S L   F++FG++   TV+ DR+T +SRG  F+ F  +D A  A K+M GK LNGR ++  +AT+   A
Subjt:  GGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRA

AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.6e-1036.17Show/hide
Query:  LYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKS
        L+VS      T+  L  LFS FG+I    +++D +T++ +G  FI F S+DDA KA K + GKI++GR++   +A    + AE +R  +  +K+
Subjt:  LYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKS

AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.6e-1042.35Show/hide
Query:  PSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGR
        P  S + V N  FS +   L   FS FG+IA V ++KD   ++S+G AFIQF SQDDA  A + M  ++ NGR++   IA    R
Subjt:  PSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCGAAGGGGGAAAAGAACCAATAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTACCGATATCCCTCCGCCACCTCTTCTGCCCCCCCGCCGTCGTC
GTCTTCACAGTCGCATTCCTCATCGCAATTGCACTCACATTCTTCCTCCAAGTCCGGCGGTGGCTCTGGCGGTTTGGTCCCTTCGAAATCTACTCTTTACGTTTCCAATT
TCGACTTCTCCCTCACCAATTCCGACCTCCATACTCTATTTTCCACCTTCGGTAAGATCGCCCGTGTTACAGTGCTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGTT
GCTTTCATCCAGTTTATTTCTCAGGACGACGCGGTCAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTTAAGGCTGCTATTGCGACTGACAATGG
CCGCGCCGCTGAATTCATAAGGAAGAGGGTTTACAAGGATAAGAGTAGGTGCTACGAGTGTGGCGCAGTTGACGGGCATTTGTCTTATGAGTGCCCTAAAAATCAATTGG
GGCCAAGGGAGCGACCGGAACCGAAGCGGGGGAGAAGAGGTGGAGCCGGTGCCAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTCGAGGATGACAATTGG
GCCTCGGTGGTGGATGGAGATGCGGACCAGAGATTGCTGACGGGCGGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAACGAGTTATTTCAGTGACGAGAGTGATGA
AGATGAGTAA
mRNA sequenceShow/hide mRNA sequence
GGAGACTCACGGTGAAGAAATGGCGCGAAGGGGGAAAAGAACCAATAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTACCGATATCCCTCCGCCACCTCTT
CTGCCCCCCCGCCGTCGTCGTCTTCACAGTCGCATTCCTCATCGCAATTGCACTCACATTCTTCCTCCAAGTCCGGCGGTGGCTCTGGCGGTTTGGTCCCTTCGAAATCT
ACTCTTTACGTTTCCAATTTCGACTTCTCCCTCACCAATTCCGACCTCCATACTCTATTTTCCACCTTCGGTAAGATCGCCCGTGTTACAGTGCTGAAAGATCGCCAGAC
TCGCAAGTCTCGCGGCGTTGCTTTCATCCAGTTTATTTCTCAGGACGACGCGGTCAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTTAAGGCTG
CTATTGCGACTGACAATGGCCGCGCCGCTGAATTCATAAGGAAGAGGGTTTACAAGGATAAGAGTAGGTGCTACGAGTGTGGCGCAGTTGACGGGCATTTGTCTTATGAG
TGCCCTAAAAATCAATTGGGGCCAAGGGAGCGACCGGAACCGAAGCGGGGGAGAAGAGGTGGAGCCGGTGCCAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGG
GTTCGAGGATGACAATTGGGCCTCGGTGGTGGATGGAGATGCGGACCAGAGATTGCTGACGGGCGGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAACGAGTTATT
TCAGTGACGAGAGTGATGAAGATGAGTAATTTCTAGTTTATCTCTTTGGAAAGAGTTCGCGAAGATTATTTGGAAGATTTCACGACTCCACATTAAGCTTTACAAGAGTG
TGTCAACCAGCATAGCCCCCATAGATGAGAAAGATACCTATTATCATTCTAAAGGTTGATGGTTCGATCCCCATATTGTAATTGTTGAATTCAAAATCACAAGATCCTAT
GGGGGCGGTCGACAAAAAACACAGGGTCCTTCATTCGCTGCCTTCAACAACTAATTATCTTGGACGGTTAATGGTGGAGAAGGCAGAAAGCAAAATTAAGTTGACACACT
GCCTCTGTGGGGGGAGGGAAGATGACCTTTGTAGAAAGTTATGCTTGCCATCACTATTATTCTATTTCTTGCCCATCTTTATTTAAGATTTCCTTCAAACAGGCTGTGGC
TACTGAAAAAATATTGTCTTTCTTTAATGAACTGGGCATTGTAAATTTCAAAAAGAAAGATGTGGTTTTATTTTGCTAAAATGGCTACTGAAGCTTCCAATGGTGGAGAA
GAGAACTTAGCAGCGTTAGGTATTATTAAATTATGGCTAGATACTCGTTCTCTTGACTGGAGTTAAATTTCCCTCACTTTTCTAAAGCTAAATGCTTCCGACAGGGTTGT
TTTGTGGCTTTGGGAATTTTTTTTTTC
Protein sequenceShow/hide protein sequence
MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGV
AFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNW
ASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE