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Tan0004647 (gene) of Snake gourd v1 genome

Gene IDTan0004647
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
Genome locationLG10:3145973..3146564
RNA-Seq ExpressionTan0004647
SyntenyTan0004647
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]2.4e-0633.33Show/hide
Query:  QVTADAACSEINDRTGIGVAFCRTNGELEVALAECLEHYFNPLCSEARALYERMALAKRININRVHFFSDSLSLVAMVNGHVVITSVVQNFVSDILALWR
        ++  D AC +   RT IG+      G++  A +  +E Y +PL +E+ AL E + LA  +NI +V F SDSL L+ ++    +       ++ DI  L R
Subjt:  QVTADAACSEINDRTGIGVAFCRTNGELEVALAECLEHYFNPLCSEARALYERMALAKRININRVHFFSDSLSLVAMVNGHVVITSVVQNFVSDILALWR

Query:  AFVDF
         F+DF
Subjt:  AFVDF
TrEMBL top hitse value%identityAlignment
A0A6J1CNR4 uncharacterized protein LOC1110129501.2e-0633.33Show/hide
Query:  QVTADAACSEINDRTGIGVAFCRTNGELEVALAECLEHYFNPLCSEARALYERMALAKRININRVHFFSDSLSLVAMVNGHVVITSVVQNFVSDILALWR
        ++  D AC +   RT IG+      G++  A +  +E Y +PL +E+ AL E + LA  +NI +V F SDSL L+ ++    +       ++ DI  L R
Subjt:  QVTADAACSEINDRTGIGVAFCRTNGELEVALAECLEHYFNPLCSEARALYERMALAKRININRVHFFSDSLSLVAMVNGHVVITSVVQNFVSDILALWR

Query:  AFVDF
         F+DF
Subjt:  AFVDF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTATCTGTTGGAGCTAAAGTCCCCAAAGGCTTCCCCCAGTCATGGTAGACAGGTTACTGCAGATGCAGCTTGCAGTGAGATCAACGATCGAACAGGTATAGGGGT
TGCTTTTTGTCGTACGAATGGAGAGCTTGAAGTAGCCTTGGCAGAATGTCTAGAGCACTATTTCAATCCATTATGCTCTGAAGCTAGAGCTTTATACGAGCGCATGGCGT
TAGCCAAGCGCATAAATATCAACCGAGTCCACTTCTTCTCGGACTCATTATCACTAGTTGCAATGGTAAATGGTCATGTGGTGATCACTTCTGTTGTTCAGAACTTTGTA
AGTGACATTTTGGCTCTTTGGCGAGCTTTTGTTGACTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTATCTGTTGGAGCTAAAGTCCCCAAAGGCTTCCCCCAGTCATGGTAGACAGGTTACTGCAGATGCAGCTTGCAGTGAGATCAACGATCGAACAGGTATAGGGGT
TGCTTTTTGTCGTACGAATGGAGAGCTTGAAGTAGCCTTGGCAGAATGTCTAGAGCACTATTTCAATCCATTATGCTCTGAAGCTAGAGCTTTATACGAGCGCATGGCGT
TAGCCAAGCGCATAAATATCAACCGAGTCCACTTCTTCTCGGACTCATTATCACTAGTTGCAATGGTAAATGGTCATGTGGTGATCACTTCTGTTGTTCAGAACTTTGTA
AGTGACATTTTGGCTCTTTGGCGAGCTTTTGTTGACTTTTAG
Protein sequenceShow/hide protein sequence
MGYLLELKSPKASPSHGRQVTADAACSEINDRTGIGVAFCRTNGELEVALAECLEHYFNPLCSEARALYERMALAKRININRVHFFSDSLSLVAMVNGHVVITSVVQNFV
SDILALWRAFVDF