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Tan0004671 (gene) of Snake gourd v1 genome

Gene IDTan0004671
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG03:46550462..46558869
RNA-Seq ExpressionTan0004671
SyntenyTan0004671
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.6e-1151.14Show/hide
Query:  DCEVEIELPVPDNLP----------------YLVCLQGKT-GSTGIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDGT
        D  VEIELP+PD LP                Y   +  +  GS GI+R  +DVCWLHAV+RAK  G  G  VMPPRTSRR RQ+QDGT
Subjt:  DCEVEIELPVPDNLP----------------YLVCLQGKT-GSTGIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDGT

KAA0056353.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-1157.89Show/hide
Query:  EVEIELPVPDNLPYLVCLQGKT---GSTGIVREVNDVCWLHAVYRAKLAG----SSGWEVMPPRTSRRCRQDQDGT
        +VEIELPVPD LP      G     GS GIVR  +DVCWLH V+RAK  G      G  VMPPRTS+R RQ+QDGT
Subjt:  EVEIELPVPDNLPYLVCLQGKT---GSTGIVREVNDVCWLHAVYRAKLAG----SSGWEVMPPRTSRRCRQDQDGT

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]4.7e-1359.76Show/hide
Query:  DCEVEIELPVPDNLPYL------------VCLQGKTGSTGIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDG
        D  VEIELPVPD LP L            VC +   GS GIVR  +DVCWLHAV RAK+AG  G  VMPPRTSRR RQ+QDG
Subjt:  DCEVEIELPVPDNLPYL------------VCLQGKTGSTGIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDG

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.6e-1151.14Show/hide
Query:  DCEVEIELPVPDNLP----------------YLVCLQGKT-GSTGIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDGT
        D  VEIELP+PD LP                Y   +  +  GS GI+R  +DVCWLHAV+RAK  G  G  VMPPRTSRR RQ+QDGT
Subjt:  DCEVEIELPVPDNLP----------------YLVCLQGKT-GSTGIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDGT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-1050.57Show/hide
Query:  DCEVEIELPVPDNLPYLVCLQGKTGST-----------------GIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDG
        D  VEIELPVPD LP          ST                 GIVRE +DVCWLHAV+RAK AG  G  VMPP TS+R R +QDG
Subjt:  DCEVEIELPVPDNLPYLVCLQGKTGST-----------------GIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDG

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.2e-1151.14Show/hide
Query:  DCEVEIELPVPDNLP----------------YLVCLQGKT-GSTGIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDGT
        D  VEIELP+PD LP                Y   +  +  GS GI+R  +DVCWLHAV+RAK  G  G  VMPPRTSRR RQ+QDGT
Subjt:  DCEVEIELPVPDNLP----------------YLVCLQGKT-GSTGIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDGT

A0A5A7UKD3 DNA/RNA polymerases superfamily protein2.1e-1157.89Show/hide
Query:  EVEIELPVPDNLPYLVCLQGKT---GSTGIVREVNDVCWLHAVYRAKLAG----SSGWEVMPPRTSRRCRQDQDGT
        +VEIELPVPD LP      G     GS GIVR  +DVCWLH V+RAK  G      G  VMPPRTS+R RQ+QDGT
Subjt:  EVEIELPVPDNLPYLVCLQGKT---GSTGIVREVNDVCWLHAVYRAKLAG----SSGWEVMPPRTSRRCRQDQDGT

A0A5D3CJL4 Retrotrans_gag domain-containing protein2.3e-1359.76Show/hide
Query:  DCEVEIELPVPDNLPYL------------VCLQGKTGSTGIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDG
        D  VEIELPVPD LP L            VC +   GS GIVR  +DVCWLHAV RAK+AG  G  VMPPRTSRR RQ+QDG
Subjt:  DCEVEIELPVPDNLPYL------------VCLQGKTGSTGIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDG

A0A5D3D150 Reverse transcriptase1.2e-1151.14Show/hide
Query:  DCEVEIELPVPDNLP----------------YLVCLQGKT-GSTGIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDGT
        D  VEIELP+PD LP                Y   +  +  GS GI+R  +DVCWLHAV+RAK  G  G  VMPPRTSRR RQ+QDGT
Subjt:  DCEVEIELPVPDNLP----------------YLVCLQGKT-GSTGIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDGT

A0A5D3DX39 Reverse transcriptase1.4e-1050.57Show/hide
Query:  DCEVEIELPVPDNLPYLVCLQGKTGST-----------------GIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDG
        D  VEIELPVPD LP          ST                 GIVRE +DVCWLHAV+RAK AG  G  VMPP TS+R R +QDG
Subjt:  DCEVEIELPVPDNLPYLVCLQGKTGST-----------------GIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTTGATTGTGAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATTTAGTATGCTTACAAGGTAAAACAGGATCAACAGGTATCGTTAGAGAGGTGAA
CGATGTCTGTTGGCTTCACGCCGTCTACCGGGCTAAGTTAGCAGGTAGTTCGGGATGGGAAGTCATGCCACCACGTACTAGCAGACGATGCAGGCAAGATCAGGACGGGA
CGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGTTGATTGTGAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATTTAGTATGCTTACAAGGTAAAACAGGATCAACAGGTATCGTTAGAGAGGTGAA
CGATGTCTGTTGGCTTCACGCCGTCTACCGGGCTAAGTTAGCAGGTAGTTCGGGATGGGAAGTCATGCCACCACGTACTAGCAGACGATGCAGGCAAGATCAGGACGGGA
CGTAG
Protein sequenceShow/hide protein sequence
MNVDCEVEIELPVPDNLPYLVCLQGKTGSTGIVREVNDVCWLHAVYRAKLAGSSGWEVMPPRTSRRCRQDQDGT