CuGenDBv2

Gene ID	Tan0004712
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG04:46769662..46770367
RNA-Seq Expression	Tan0004712
Synteny	Tan0004712
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

9.1e-97

89.5

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS
        MYAMLCTRPDICYAVGIV+RYQSNPG +HWT VK +LKYLRR RDYMLVYGAKDLIL GY DSDFQTD DSRKSTSGSVFTLNGGA+VWRSIKQGCIADS
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS

Query:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV
        TME EYVAACEAAKEAVWLRKFL DLEVVPNMN PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIADP  K LT KV
Subjt:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]

5.0e-95

88.5

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS
        MYAMLCTRPDICYAVGIV+RYQSNPG +HWT VK ILKYLRR RDYMLVYGAKDLIL GY +SDFQTD DSRKSTS SVFTLNGGA+VWRSIKQGCIADS
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS

Query:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV
        TME EYVAACEAAKEAVWL+KFL DLEVVPNMN PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIADP  K LT KV
Subjt:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

2.0e-96

89.5

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS
        MY MLCTRPDICYAVGIV+RYQSNPG +HWT VK ILKYLRR RDYMLVYGAKDLIL GY DSDFQTD DSRKSTSGSVFTLNGGA+VWRSIKQGCIADS
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS

Query:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV
        TME EYVAACEAAKEAVWLRKFL DLEVVPNMN PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIADP  K LT KV
Subjt:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

9.1e-97

89.5

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS
        MYAMLCTRPDICYAVGIV+RYQSNPG +HWT VK +LKYLRR RDYMLVYGAKDLIL GY DSDFQTD DSRKSTSGSVFTLNGGA+VWRSIKQGCIADS
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS

Query:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV
        TME EYVAACEAAKEAVWLRKFL DLEVVPNMN PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIADP  K LT KV
Subjt:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]

2.6e-96

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS
        MYAMLCTRPDICYAVGIV+RYQSNPG +HWTTVK ILKYLRR RDYMLVYGAKDLIL GY DSDFQTD DSRKSTSGSVFTLN GA+VWRSIKQGCIADS
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS

Query:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV
        TME EYVAACEAAKEAVWLRKFL DLEVVPNMN PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIADP  K LT KV
Subjt:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2V9 Gag/pol protein

2.4e-95

88.5

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS
        MYAMLCTRPDICYAVGIV+RYQSNPG +HWT VK ILKYLRR RDYMLVYGAKDLIL GY +SDFQTD DSRKSTS SVFTLNGGA+VWRSIKQGCIADS
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS

Query:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV
        TME EYVAACEAAKEAVWL+KFL DLEVVPNMN PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIADP  K LT KV
Subjt:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV

A0A5A7TKM4 Gag/pol protein

9.8e-97

89.5

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS
        MY MLCTRPDICYAVGIV+RYQSNPG +HWT VK ILKYLRR RDYMLVYGAKDLIL GY DSDFQTD DSRKSTSGSVFTLNGGA+VWRSIKQGCIADS
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS

Query:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV
        TME EYVAACEAAKEAVWLRKFL DLEVVPNMN PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIADP  K LT KV
Subjt:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV

A0A5A7TZD0 Gag/pol protein

4.4e-97

89.5

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS
        MYAMLCTRPDICYAVGIV+RYQSNPG +HWT VK +LKYLRR RDYMLVYGAKDLIL GY DSDFQTD DSRKSTSGSVFTLNGGA+VWRSIKQGCIADS
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS

Query:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV
        TME EYVAACEAAKEAVWLRKFL DLEVVPNMN PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIADP  K LT KV
Subjt:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV

A0A5A7UYE8 Gag/pol protein

4.4e-97

89.5

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS
        MYAMLCTRPDICYAVGIV+RYQSNPG +HWT VK +LKYLRR RDYMLVYGAKDLIL GY DSDFQTD DSRKSTSGSVFTLNGGA+VWRSIKQGCIADS
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS

Query:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV
        TME EYVAACEAAKEAVWLRKFL DLEVVPNMN PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIADP  K LT KV
Subjt:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV

A0A5A7V1F5 Gag/pol protein

1.3e-96

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS
        MYAMLCTRPDICYAVGIV+RYQSNPG +HWTTVK ILKYLRR RDYMLVYGAKDLIL GY DSDFQTD DSRKSTSGSVFTLN GA+VWRSIKQGCIADS
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS

Query:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV
        TME EYVAACEAAKEAVWLRKFL DLEVVPNMN PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVT+I  EHNIADP  K LT KV
Subjt:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADP--KPLTTKV

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

3.3e-33

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYG---AKDLILVGYIDSDFQTDVDSRKSTSGSVFTL-NGGAIVWRSIKQGC
        MY MLCTRPD+  AV I++RY S      W  +K +L+YL+   D  L++    A +  ++GY+DSD+      RKST+G +F + +   I W + +Q  
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYG---AKDLILVGYIDSDFQTDVDSRKSTSGSVFTL-NGGAIVWRSIKQGC

Query:  IADSTMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIAD--PKPL
        +A S+ E EY+A  EA +EA+WL+  LT + +   +  PI +Y DN G ++ +  P  HKR KHI+ KYH  RE VQ   + +  I  E+ +AD   KPL
Subjt:  IADSTMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIAD--PKPL

P0CV72 Secreted RxLR effector protein 161

4.3e-25

48.33

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVY-GAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIAD
        MY M+ TRPD+  AVG+++++ S+P   HW  +K +L+YL+  + Y L +  A    LVGY D+D+  DV+SR+STSG +F LNGG + WRS KQ  +A 
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVY-GAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIAD

Query:  STMEGEYVAACEAAKEAVWL
        S+ E EY+A  EA +EAVWL
Subjt:  STMEGEYVAACEAAKEAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.4e-44

45.41

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS
        MYAM+CTRPDI +AVG+V+R+  NPG  HW  VK IL+YLR      L +G  D IL GY D+D   D+D+RKS++G +FT +GGAI W+S  Q C+A S
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADS

Query:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADPKPLTTKVTV
        T E EY+AA E  KE +WL++FL +L +         +YCD+  A+  SK    H R KHI+ +YH IRE+V    + V +I+   N AD   + TKV  
Subjt:  TMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADPKPLTTKVTV

Query:  LVQVGVC
          +  +C
Subjt:  LVQVGVC

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

5.6e-25

34.9

Show/hide

Query:  TRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDY-MLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADSTMEGE
        TRPD+ YAV  +++Y   P  +HW  +K +L+YL    D+ + +     L L  Y D+D+  D D   ST+G +  L    I W S KQ  +  S+ E E
Subjt:  TRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDY-MLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADSTMEGE

Query:  YVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIAD--PKPLT
        Y +    + E  W+   LT+L +   ++ P  +YCDN GA      P  H R KHI   YH IR  VQ G + V  ++    +AD   KPL+
Subjt:  YVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIAD--PKPLT

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.2e-19

33.33

Show/hide

Query:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAK-DLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIAD
        MY  + TR DI +AV  ++++   P   H   V  IL Y++      L Y ++ ++ L  + D+ FQ+  D+R+ST+G    L    I W+S KQ  ++ 
Subjt:  MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAK-DLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIAD

Query:  STMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE
        S+ E EY A   A  E +WL +F  +L++   ++ P  L+CDN+ A+  +     H+R KHIE   H +RE
Subjt:  STMEGEYVAACEAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTATGCCATGCTATGTACTAGACCCGACATATGCTATGCAGTGGGAATAGTCAACAGGTATCAGTCTAATCCAGGATATAATCACTGGACAACTGTTAAGAACATCCT
CAAGTATCTTAGGAGAATGAGGGACTATATGCTTGTGTATGGCGCAAAGGATTTGATCCTTGTAGGATACATTGACTCTGATTTTCAGACTGATGTAGATTCGAGAAAAT
CCACATCAGGATCAGTGTTCACTCTTAACGGAGGAGCTATAGTTTGGAGGAGTATAAAGCAAGGTTGTATTGCTGACTCCACCATGGAGGGTGAGTACGTCGCAGCTTGC
GAAGCAGCGAAGGAAGCTGTATGGCTTAGGAAGTTCTTGACTGATTTGGAAGTTGTTCCAAATATGAATTTCCCTATTACCCTTTATTGTGATAATAGTGGTGCAGTGGC
AAATTCCAAAGAACCTAGAAGCCATAAGCGCGGAAAGCACATAGAGCGCAAATATCATCTCATCAGGGAGATTGTGCAACGAGGAGACGTGATCGTCACGCAAATCACTT
TGGAGCACAACATTGCTGATCCGAAGCCCCTCACGACAAAAGTGACAGTTTTAGTCCAAGTGGGAGTTTGTTGGGTTTTATGTCCTAAAACTCGTGGTTTTGTAAACTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MYAMLCTRPDICYAVGIVNRYQSNPGYNHWTTVKNILKYLRRMRDYMLVYGAKDLILVGYIDSDFQTDVDSRKSTSGSVFTLNGGAIVWRSIKQGCIADSTMEGEYVAAC
EAAKEAVWLRKFLTDLEVVPNMNFPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQITLEHNIADPKPLTTKVTVLVQVGVCWVLCPKTRGFVN

Tan0004712 (gene) of Snake gourd v1 genome