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Tan0004733 (gene) of Snake gourd v1 genome

Gene IDTan0004733
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionF-box protein GID2-like
Genome locationLG02:82398217..82399304
RNA-Seq ExpressionTan0004733
SyntenyTan0004733
Gene Ontology termsGO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0009791 - post-embryonic development (biological process)
GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily
IPR045118 - F-box only protein FBXO9/FBXO48


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598351.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]3.1e-4578.33Show/hide
Query:  MKKIK--SQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIK  S+E Q  P +++ F N DDNLLFEVFKHVDARTLATAAGVSKQWYKTAHD+ LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIK--SQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSPSSNPNPNPWGKDETH
        +IGS S      PWGKDE H
Subjt:  MIGSPSSNPNPNPWGKDETH
XP_008445558.1 PREDICTED: F-box protein GID2-like [Cucumis melo]2.2e-4371.88Show/hide
Query:  NNMKKIKS--------QESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRL
        N +KK KS         ESQP P+T   F N DDNLLFEVFKHVDARTLATAAGV+KQW+KTAHD+RLWEL+CTKHW N+GCANQQLRSVVLALGGFRRL
Subjt:  NNMKKIKS--------QESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRL

Query:  HSLYPFAPMIGSPSSNPNPNPWGKDETH
        HSLYPF PMIG        +PWGKDE H
Subjt:  HSLYPFAPMIGSPSSNPNPNPWGKDETH
XP_022962352.1 F-box protein GID2-like [Cucurbita moschata]7.6e-4476.67Show/hide
Query:  MKKIK--SQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIK  S+E Q  P +++ F N DDNLLFEVFKHVDARTLATAAGVSKQW KTAHD+ LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIK--SQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSPSSNPNPNPWGKDETH
        ++GS S      PWGKDE H
Subjt:  MIGSPSSNPNPNPWGKDETH
XP_022996700.1 F-box protein GID2-like [Cucurbita maxima]6.5e-4375.83Show/hide
Query:  MKKIK--SQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIK  SQE Q  P +++ F N DDNLLFEVFKHVDARTLATA+GVSKQWYKTAHD+ LWEL+CTKHWANIGCAN QLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIK--SQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSPSSNPNPNPWGKDETH
        +IGS S       WGK E H
Subjt:  MIGSPSSNPNPNPWGKDETH
XP_023522812.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]1.8e-4576.86Show/hide
Query:  MKKIKS---QESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFA
        MKKIKS   ++  P P++++ F N DDNLLFEVFKHVDARTLATAAGVSKQWYKTAHD+ LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF 
Subjt:  MKKIKS---QESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFA

Query:  PMIGSPSSNPNPNPWGKDETH
        P+IGS S      PWGKDE H
Subjt:  PMIGSPSSNPNPNPWGKDETH
TrEMBL top hitse value%identityAlignment
A0A0A0LR75 F-box domain-containing protein4.1e-4371.65Show/hide
Query:  NNMKKIKS-------QESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLH
        N +KK KS         SQP P+T   F N DDNLLFEVFKHVDARTLAT AGVSKQW+KTAHD+RLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLH
Subjt:  NNMKKIKS-------QESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLH

Query:  SLYPFAPMIGSPSSNPNPNPWGKDETH
        SLYPF PMIG        +PWGKDE H
Subjt:  SLYPFAPMIGSPSSNPNPNPWGKDETH
A0A1S3BDV6 F-box protein GID2-like1.1e-4371.88Show/hide
Query:  NNMKKIKS--------QESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRL
        N +KK KS         ESQP P+T   F N DDNLLFEVFKHVDARTLATAAGV+KQW+KTAHD+RLWEL+CTKHW N+GCANQQLRSVVLALGGFRRL
Subjt:  NNMKKIKS--------QESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRL

Query:  HSLYPFAPMIGSPSSNPNPNPWGKDETH
        HSLYPF PMIG        +PWGKDE H
Subjt:  HSLYPFAPMIGSPSSNPNPNPWGKDETH
A0A5A7V5E1 F-box protein GID2-like1.1e-4371.88Show/hide
Query:  NNMKKIKS--------QESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRL
        N +KK KS         ESQP P+T   F N DDNLLFEVFKHVDARTLATAAGV+KQW+KTAHD+RLWEL+CTKHW N+GCANQQLRSVVLALGGFRRL
Subjt:  NNMKKIKS--------QESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRL

Query:  HSLYPFAPMIGSPSSNPNPNPWGKDETH
        HSLYPF PMIG        +PWGKDE H
Subjt:  HSLYPFAPMIGSPSSNPNPNPWGKDETH
A0A6J1HCI1 F-box protein GID2-like3.7e-4476.67Show/hide
Query:  MKKIK--SQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIK  S+E Q  P +++ F N DDNLLFEVFKHVDARTLATAAGVSKQW KTAHD+ LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIK--SQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSPSSNPNPNPWGKDETH
        ++GS S      PWGKDE H
Subjt:  MIGSPSSNPNPNPWGKDETH
A0A6J1K7I7 F-box protein GID2-like3.1e-4375.83Show/hide
Query:  MKKIK--SQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIK  SQE Q  P +++ F N DDNLLFEVFKHVDARTLATA+GVSKQWYKTAHD+ LWEL+CTKHWANIGCAN QLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIK--SQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSPSSNPNPNPWGKDETH
        +IGS S       WGK E H
Subjt:  MIGSPSSNPNPNPWGKDETH
SwissProt top hitse value%identityAlignment
Q7XAK4 F-box protein GID21.8e-1947.87Show/hide
Query:  KSQESQPLPTTATGFE----NFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY
        + QE QP      G +    +  ++L+FEV +  +ARTLA AA VS+ W + A D+RLWE  C + WAN+G + +QLR+VVL+LGGFRRLH++Y
Subjt:  KSQESQPLPTTATGFE----NFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY
Q9LUB6 F-box protein SNE5.6e-0535.62Show/hide
Query:  NFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSL
        N   ++L E+ + +D  +L +AA V + W   A +D +WE +C +  +     +  LRSVV ALGG+R L+ L
Subjt:  NFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSL
Q9STX3 F-box protein GID21.4e-3260Show/hide
Query:  KKIKSQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG
        KK+KS E + +     GF N D+NL++EV KHVDA+TLA ++ VSK W+KTA D+RLWELICT+HW NIGC   QLRSVVLALGGFRRLHSLY +     
Subjt:  KKIKSQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG

Query:  SPSSNPNPNP-WGKDETHKT
         P S PNP   +GKDE   T
Subjt:  SPSSNPNPNP-WGKDETHKT
Arabidopsis top hitse value%identityAlignment
AT4G24210.1 F-box family protein1.0e-3360Show/hide
Query:  KKIKSQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG
        KK+KS E + +     GF N D+NL++EV KHVDA+TLA ++ VSK W+KTA D+RLWELICT+HW NIGC   QLRSVVLALGGFRRLHSLY +     
Subjt:  KKIKSQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG

Query:  SPSSNPNPNP-WGKDETHKT
         P S PNP   +GKDE   T
Subjt:  SPSSNPNPNP-WGKDETHKT
AT5G39250.1 F-box family protein1.3e-0436.73Show/hide
Query:  FDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANI
        F + +L  VF  ++   LA+  GV KQW   A DD  W+  C K W ++
Subjt:  FDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANI
AT5G48170.1 F-box family protein4.0e-0635.62Show/hide
Query:  NFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSL
        N   ++L E+ + +D  +L +AA V + W   A +D +WE +C +  +     +  LRSVV ALGG+R L+ L
Subjt:  NFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAAGAAGAAGCGCCCTCTTTCCCACCACGATTCCTTCAACAACATGAAGAAAATCAAGTCACAAGAATCCCAACCACTGCCTACTACTGCAACTGGGTTTGA
AAATTTTGACGACAATCTGTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTGGCCACGGCTGCCGGCGTCAGCAAGCAATGGTACAAAACGGCACACGACGACC
GCCTTTGGGAGCTTATCTGCACCAAACACTGGGCCAACATCGGCTGTGCCAACCAACAGCTACGATCCGTCGTGCTTGCTCTTGGTGGCTTCCGTCGCTTGCACTCTCTT
TACCCATTTGCGCCTATGATTGGATCGCCTTCCTCTAATCCTAATCCTAATCCATGGGGGAAAGACGAGACCCACAAAACTAGTCTTCGCGCAACTGGTTCTATTTTCTG
TACCCAAATAGTTCATCGTTTTGAGTCAAATCATGGGGGTTTAGAAGGGAAAAGTTCGATGGGGTCTCATCGATTCACAGAGAGAAATTTCGGGCTGCTTTCAAGTTCAA
GGTCTACTACAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGAAGAAGAAGCGCCCTCTTTCCCACCACGATTCCTTCAACAACATGAAGAAAATCAAGTCACAAGAATCCCAACCACTGCCTACTACTGCAACTGGGTTTGA
AAATTTTGACGACAATCTGTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTGGCCACGGCTGCCGGCGTCAGCAAGCAATGGTACAAAACGGCACACGACGACC
GCCTTTGGGAGCTTATCTGCACCAAACACTGGGCCAACATCGGCTGTGCCAACCAACAGCTACGATCCGTCGTGCTTGCTCTTGGTGGCTTCCGTCGCTTGCACTCTCTT
TACCCATTTGCGCCTATGATTGGATCGCCTTCCTCTAATCCTAATCCTAATCCATGGGGGAAAGACGAGACCCACAAAACTAGTCTTCGCGCAACTGGTTCTATTTTCTG
TACCCAAATAGTTCATCGTTTTGAGTCAAATCATGGGGGTTTAGAAGGGAAAAGTTCGATGGGGTCTCATCGATTCACAGAGAGAAATTTCGGGCTGCTTTCAAGTTCAA
GGTCTACTACAATTTAA
Protein sequenceShow/hide protein sequence
MKKKKKRPLSHHDSFNNMKKIKSQESQPLPTTATGFENFDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDDRLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSL
YPFAPMIGSPSSNPNPNPWGKDETHKTSLRATGSIFCTQIVHRFESNHGGLEGKSSMGSHRFTERNFGLLSSSRSTTI