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Tan0004758 (gene) of Snake gourd v1 genome

Gene IDTan0004758
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein, putative, unclassified, expressed
Genome locationLG07:8648382..8649127
RNA-Seq ExpressionTan0004758
SyntenyTan0004758
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAX95313.1 hypothetical protein [Oryza sativa Japonica Group]5.9e-0629.63Show/hide
Query:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKS---VITKLL
        +GN + + I  +PWI    + R  +  G+ + K V+D I+ EG WD  R+ +A L  DV D++  + L      D ++W P+   +F ++S   + T L 
Subjt:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKS---VITKLL

Query:  RTSSESAN
         + S S++
Subjt:  RTSSESAN

ACK44480.1 hypothetical protein 2 [Triticum aestivum]7.0e-0731.73Show/hide
Query:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKLLRTS
        +GN ++V I  +PW+P   ++RP  V G  + +RVAD +S  G WD   +++  ++ DV ++L I      + +DV+ W+P+ K  F V+S     L   
Subjt:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKLLRTS

Query:  SESA
        S ++
Subjt:  SESA

EEC79647.1 hypothetical protein OsI_20882 [Oryza sativa Indica Group]5.4e-0732.17Show/hide
Query:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKL----
        +GN K V I  +PW+P   + RP    G  + K V+D +S+ G WDE+RV +  L  D   + +I  +     +D + W P+   KF V+S         
Subjt:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKL----

Query:  -LRTSSESANLQGKR
         + TSS S++   KR
Subjt:  -LRTSSESANLQGKR

EEC80386.1 hypothetical protein OsI_22511 [Oryza sativa Indica Group]5.4e-0732.17Show/hide
Query:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKL----
        +GN K V I  +PW+P   + RP    G  + K V+D +S+ G WDE+RV +  L  D   + +I  +     +D + W P+   KF V+S         
Subjt:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKL----

Query:  -LRTSSESANLQGKR
         + TSS S++   KR
Subjt:  -LRTSSESANLQGKR

EEC84753.1 hypothetical protein OsI_31756 [Oryza sativa Indica Group]3.5e-0628.85Show/hide
Query:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKLLRTS
        +GN + V I  +PWIP   + RP      +K K V D ++  G+WD +RV++     D  +V+  + +   + +D + W P+   +F V+S  +  +  +
Subjt:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKLLRTS

Query:  SESA
        SE+A
Subjt:  SESA

TrEMBL top hitse value%identityAlignment
B8AWH5 Uncharacterized protein2.6e-0732.17Show/hide
Query:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKL----
        +GN K V I  +PW+P   + RP    G  + K V+D +S+ G WDE+RV +  L  D   + +I  +     +D + W P+   KF V+S         
Subjt:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKL----

Query:  -LRTSSESANLQGKR
         + TSS S++   KR
Subjt:  -LRTSSESANLQGKR

B8B0K2 CCHC-type domain-containing protein2.6e-0732.17Show/hide
Query:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKL----
        +GN K V I  +PW+P   + RP    G  + K V+D +S+ G WDE+RV +  L  D   + +I  +     +D + W P+   KF V+S         
Subjt:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKL----

Query:  -LRTSSESANLQGKR
         + TSS S++   KR
Subjt:  -LRTSSESANLQGKR

B8BCR5 Uncharacterized protein1.7e-0628.85Show/hide
Query:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKLLRTS
        +GN + V I  +PWIP   + RP      +K K V D ++  G+WD +RV++     D  +V+  + +   + +D + W P+   +F V+S  +  +  +
Subjt:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKLLRTS

Query:  SESA
        SE+A
Subjt:  SESA

D0QEJ8 zf-RVT domain-containing protein3.4e-0731.73Show/hide
Query:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKLLRTS
        +GN ++V I  +PW+P   ++RP  V G  + +RVAD +S  G WD   +++  ++ DV ++L I      + +DV+ W+P+ K  F V+S     L   
Subjt:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKLLRTS

Query:  SESA
        S ++
Subjt:  SESA

Q53JP3 Retrotransposon protein, putative, unclassified, expressed2.9e-0629.63Show/hide
Query:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKS---VITKLL
        +GN + + I  +PWI    + R  +  G+ + K V+D I+ EG WD  R+ +A L  DV D++  + L      D ++W P+   +F ++S   + T L 
Subjt:  LGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKS---VITKLL

Query:  RTSSESAN
         + S S++
Subjt:  RTSSESAN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGGAATAGTAAACATGTTCATATAGAGGACAACCCTTGGATTCCCAATTCAAGTAACTTTCGTCCTTGTGCAGTGGCTGGCACTTTCAAGAACAAGCGCGTTGC
AGATCCAATTAGCCAGGAGGGAGATTGGGACGAATCTCGTGTAAAAGAGGCTCTATTGACTCATGACGTAATCGATGTGCTCAATATCGTCCACCTTGAGGGCAACAATA
GGAACGATGTGATCATCTGGAGCCCCAACAATAAAGAAAAGTTTTATGTGAAAAGTGTCATTACGAAACTACTTCGTACCTCTTCTGAGAGTGCAAATTTGCAAGGAAAG
CGTGGAAGACCTTTTTCCCTTCCAAGTTTTGTTGGCTCTCTGTTGGAGGAGGTCGTTGGACCCCAAAGGATTACTGGGATTACAAAAGAAAAGAAGTGGAGCAGGACGAT
CTTGAGAAGATTTTCATTGTCCTTTGGAACACATGGAGGGAGCGAAACAATATCCATTTTAGAGGTACCCATCTTCACTGGAACGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGGAATAGTAAACATGTTCATATAGAGGACAACCCTTGGATTCCCAATTCAAGTAACTTTCGTCCTTGTGCAGTGGCTGGCACTTTCAAGAACAAGCGCGTTGC
AGATCCAATTAGCCAGGAGGGAGATTGGGACGAATCTCGTGTAAAAGAGGCTCTATTGACTCATGACGTAATCGATGTGCTCAATATCGTCCACCTTGAGGGCAACAATA
GGAACGATGTGATCATCTGGAGCCCCAACAATAAAGAAAAGTTTTATGTGAAAAGTGTCATTACGAAACTACTTCGTACCTCTTCTGAGAGTGCAAATTTGCAAGGAAAG
CGTGGAAGACCTTTTTCCCTTCCAAGTTTTGTTGGCTCTCTGTTGGAGGAGGTCGTTGGACCCCAAAGGATTACTGGGATTACAAAAGAAAAGAAGTGGAGCAGGACGAT
CTTGAGAAGATTTTCATTGTCCTTTGGAACACATGGAGGGAGCGAAACAATATCCATTTTAGAGGTACCCATCTTCACTGGAACGACTTGA
Protein sequenceShow/hide protein sequence
MLGNSKHVHIEDNPWIPNSSNFRPCAVAGTFKNKRVADPISQEGDWDESRVKEALLTHDVIDVLNIVHLEGNNRNDVIIWSPNNKEKFYVKSVITKLLRTSSESANLQGK
RGRPFSLPSFVGSLLEEVVGPQRITGITKEKKWSRTILRRFSLSFGTHGGSETISILEVPIFTGTT