CuGenDBv2

Gene ID	Tan0004798
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase III subunit RPC8
Genome location	LG06:5351579..5356197
RNA-Seq Expression	Tan0004798
Synteny	Tan0004798
Gene Ontology terms	GO:0006384 - transcription initiation from RNA polymerase III promoter (biological process) GO:0008380 - RNA splicing (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7014295.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argyrosperma]

3.6e-96

88.72

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MFY+S+IEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVF LIVFRP+ GEI+IGKVKESDANGLRIS
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPV-EQPKESNLKFPMEEQPQENRNVKAFAPMIVT
        LGFFEDIYVPIHLLPSPSEF PDPKNGGKRRWVWD+DG+PYDIYETDEIKFR+H I+YPAIPV +QP ESN KF MEEQP+EN NVK FAPM+VT
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPV-EQPKESNLKFPMEEQPQENRNVKAFAPMIVT

XP_022152296.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia]

3.0e-95

89.8

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Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MFY+S+IEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVF LIVFRP+VGEI+IGKVKESDANGLRIS
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPVEQPKESNLKFPMEE-QPQEN-RNVKAFAPMIVT
        LGFFEDIYVPIHLLP+PSEF PD KNGGKRRWVWD+DG+PYDIYETDEIKFR+H IEYPAIPVEQPKESN KF  EE QP+E+  NVKAFAPMIVT
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPVEQPKESNLKFPMEE-QPQEN-RNVKAFAPMIVT

XP_022954042.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata]

3.6e-96

88.72

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Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MFY+S+IEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVF LIVFRP+ GEI+IGKVKESDANGLRIS
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPV-EQPKESNLKFPMEEQPQENRNVKAFAPMIVT
        LGFFEDIYVPIHLLPSPSEF PDPKNGGKRRWVWD+DG+PYDIYETDEIKFR+H I+YPAIPV +QP ESN KF MEEQP+EN NVK FAPM+VT
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPV-EQPKESNLKFPMEEQPQENRNVKAFAPMIVT

XP_022991804.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima]

1.0e-95

88.21

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MFY+S+IEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVF LIVFRP+ GEI+IGKVKESDANGLRIS
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPV-EQPKESNLKFPMEEQPQENRNVKAFAPMIVT
        LGFFEDIYVPIHLLPSPSEF PDPKN GKRRWVWD+DG+PYDIYETDEIKFR+H I+YP IPV +QP ESN KF MEEQP+EN NVK FAPM+VT
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPV-EQPKESNLKFPMEEQPQENRNVKAFAPMIVT

XP_023547503.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo]

7.3e-97

89.23

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Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MFY+S+IEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVF LIVFRP+ GEI+IGKVKESDANGLRIS
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPV-EQPKESNLKFPMEEQPQENRNVKAFAPMIVT
        LGFFEDIYVPIHLLPSPSEF PDPKNGGKRRWVWD+DG+PYDIYETDEIKFR+H I+YPAIPV +QP ESN KF MEEQP+EN NVK FAPM+VT
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPV-EQPKESNLKFPMEEQPQENRNVKAFAPMIVT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CEN6 DNA-directed RNA polymerase III subunit RPC8 isoform X1

3.3e-87

79.9

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MFY+S+IEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVF LIVFRPF GE++IGKV+ES+ NGLRIS
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQENRNVKAFAPMIVT
        LGFFEDIYVP+ L+PS SEF PD  NGG+RRWVW ++  P+DIYE+DEIKF++H IEYPAI VEQPKESN KFPMEE+P+E+ NVK FAPM++T
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQENRNVKAFAPMIVT

A0A5A7UWI5 DNA-directed RNA polymerase III subunit RPC8 isoform X1

3.3e-87

79.9

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MFY+S+IEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVF LIVFRPF GE++IGKV+ES+ NGLRIS
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQENRNVKAFAPMIVT
        LGFFEDIYVP+ L+PS SEF PD  NGG+RRWVW ++  P+DIYE+DEIKF++H IEYPAI VEQPKESN KFPMEE+P+E+ NVK FAPM++T
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQENRNVKAFAPMIVT

A0A6J1DFX3 DNA-directed RNA polymerase III subunit RPC8 isoform X2

1.5e-95

89.8

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MFY+S+IEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVF LIVFRP+VGEI+IGKVKESDANGLRIS
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPVEQPKESNLKFPMEE-QPQEN-RNVKAFAPMIVT
        LGFFEDIYVPIHLLP+PSEF PD KNGGKRRWVWD+DG+PYDIYETDEIKFR+H IEYPAIPVEQPKESN KF  EE QP+E+  NVKAFAPMIVT
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPVEQPKESNLKFPMEE-QPQEN-RNVKAFAPMIVT

A0A6J1GPX5 DNA-directed RNA polymerase III subunit RPC8

1.7e-96

88.72

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MFY+S+IEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVF LIVFRP+ GEI+IGKVKESDANGLRIS
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPV-EQPKESNLKFPMEEQPQENRNVKAFAPMIVT
        LGFFEDIYVPIHLLPSPSEF PDPKNGGKRRWVWD+DG+PYDIYETDEIKFR+H I+YPAIPV +QP ESN KF MEEQP+EN NVK FAPM+VT
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPV-EQPKESNLKFPMEEQPQENRNVKAFAPMIVT

A0A6J1JVU8 DNA-directed RNA polymerase III subunit RPC8

5.1e-96

88.21

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MFY+S+IEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVF LIVFRP+ GEI+IGKVKESDANGLRIS
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPV-EQPKESNLKFPMEEQPQENRNVKAFAPMIVT
        LGFFEDIYVPIHLLPSPSEF PDPKN GKRRWVWD+DG+PYDIYETDEIKFR+H I+YP IPV +QP ESN KF MEEQP+EN NVK FAPM+VT
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPV-EQPKESNLKFPMEEQPQENRNVKAFAPMIVT

SwissProt top hits

e value

%identity

Alignment

O94285 DNA-directed RNA polymerase III subunit rpc8

2.8e-27

35.59

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MF +S+    + + PS    P  +A+  E+ K + +KV+ N+GL I VYD   +  G I   DG++   VVFRLI+FRPF GE+++GK+K     G+R++
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEP--------YDIYETDEIKFRVHGIEYPAIPVEQPKES
        + FF+DI++P  +L  P  F PD     +R WVW  +GE         +DI E  EI+F++   ++  I  ++ K +
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEP--------YDIYETDEIKFRVHGIEYPAIPVEQPKES

P35718 DNA-directed RNA polymerase III subunit RPC8

2.6e-28

35.06

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MF +SKI   +R+PP   H   + AI  +L   F +K++ N+GLCI++YD+ +V+ G + P DG++   V FR +VF+PF+GEIV G + +  A G+++S
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  -LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDE-IKFRVHGIEYPAIPVEQPKESNLK
         LG F+DI++P ++L     + P+     +  W+W  D E    ++ +E I+FR+    +  +  + PKE  L+
Subjt:  -LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDE-IKFRVHGIEYPAIPVEQPKESNLK

Q2T9X1 DNA-directed RNA polymerase III subunit RPC8

4.4e-28

35.14

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MF + ++  T+R+PP      + D+I  EL K   +KV+ N+GLCI ++DI  ++  ++FP DGA+  KV FR +VF PF+ EI+IGK+K     G+ +S
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGE--PYDIYET--DEIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQE
        LGFF+DI +P   L  P++F     +  ++ WVW+++ E   +D+Y    +E++FRV    +       P  +      EE P++
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGE--PYDIYET--DEIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQE

Q9D2C6 DNA-directed RNA polymerase III subunit RPC8

1.5e-28

36.22

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MF + ++  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++FP DGA+  KV FR +VF PF+ EI+IGK+K     G+ +S
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGE--PYDIY--ETDEIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQE
        LGFF+DI +P   L  P++F     +  ++ WVW+++ E   +D+Y    +EI+FRV    +       P  +      EE P++
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGE--PYDIY--ETDEIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQE

Q9Y535 DNA-directed RNA polymerase III subunit RPC8

1.1e-28

36.22

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MF + ++  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++FP DGA+  KV FR +VF PF+ EI+IGK+K     G+ +S
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGE--PYDIY--ETDEIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQE
        LGFF+DI +P   L  P++F     +  ++ WVW+++ E   +D+Y    +EI+FRV    +       P  ++     EE P++
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGE--PYDIY--ETDEIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQE

Arabidopsis top hits

e value

%identity

Alignment

AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein

6.4e-59

54.31

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MFY+S++EH+LRVPP +L+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ P DGAATYKV  R++VFRPFVGE++  K KESDANGLR++
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETD---EIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQENRNVKAFAPMIVT
        LGFF+DIYVP  L+P P+   PDP N  +  WVW++ GEP + Y  D   +IKFRV  I YP++P E+ +++                K FAPM+VT
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETD---EIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQENRNVKAFAPMIVT

AT1G06790.2 RNA polymerase Rpb7 N-terminal domain-containing protein

2.2e-59

54.55

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MFY+S++EH+LRVPP +L+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ P DGAATYKV  R++VFRPFVGE++  K KESDANGLR++
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETD---EIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQENRNVKAFAPMIVTV
        LGFF+DIYVP  L+P P+   PDP N  +  WVW++ GEP + Y  D   +IKFRV  I YP++P E+ +++                K FAPM+VTV
Subjt:  LGFFEDIYVPIHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETD---EIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQENRNVKAFAPMIVTV

AT5G59180.1 DNA-directed RNA polymerase II

1.4e-05

26.4

Show/hide

Query:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS
        MF+   +E  +++ P      + + +  +L K          G  +++  I ++  G I    G  T+ V ++ +VFRPF GEI+   V       L   
Subjt:  MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRIS

Query:  LGFFED-----IYVPIHLLPSPSEF
        +GFF +     I+V  HL+P   EF
Subjt:  LGFFED-----IYVPIHLLPSPSEF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTCTACATTAGCAAAATCGAGCACACATTACGTGTGCCTCCGAGCATGCTTCACCTACCTATCCTTGATGCCATTAAGGGCGAGCTAGAGAAACTATTCCTGGATAA
GGTGGTTGCAAACTTGGGGCTCTGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGTGATGGCGCTGCAACATACAAGGTTGTGTTCAGGT
TGATTGTGTTTCGTCCATTCGTGGGGGAGATAGTTATTGGAAAAGTTAAAGAATCAGATGCAAATGGTTTGCGAATATCACTTGGATTTTTCGAGGACATTTATGTTCCC
ATCCATCTTCTGCCCTCTCCATCTGAATTCATGCCCGATCCAAAAAATGGTGGAAAACGCAGATGGGTATGGGACTTTGACGGCGAACCATACGACATATATGAAACTGA
TGAGATAAAATTTAGAGTACACGGCATTGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGTAATTTAAAGTTCCCAATGGAGGAGCAACCACAAGAAAATAGAA
ATGTAAAAGCATTTGCTCCCATGATTGTTACTGTATGTCACTCACTCTCGACTTCTACCATTTACTCTACTTATCTTATTGATATATGTGCTTTATCTAAGAAAAATCTT
ATTGATATATATGTGTGTAGCATTAGTTAA

mRNA sequence

Show/hide mRNA sequence

CAAAAATTTAACCCACTTTTTTAAAATAAATTTAAAAAAATGAGAAAGCCCTAAGGATCCATCTTCTTCCTCTCAGTCTCACGTGCTCCACCGCCTCTTTTTCACTCTTA
ACAGGTCGCGCCGAAACCTTGCGGCCGTCGCCGTTCAGTCCCGCCGCCGCCTCCTCCTCTCCCCAGCTCGGCTTTTCTTAGAGAAAACAAGGAAGGAGGAAAATTAGGTT
CGAAATTTAGAAATCAGTGCATCTAGTATTCCACAGGTTATTATAACATGTGCTCTAAATAGGCCTATGTCTACCAAGTCTGGGCCTTGGGGCGTGTGCGGGTATCCTGG
GTATAGGGGAACAAAAATCTCCGACACCCCGTTATCCTAAAAATTTAGAGCCTCAAGGAATGTGTTTTGGTTGGAACTAGTAGACTTAGAGAACATCCAAATGTTCTACA
TTAGCAAAATCGAGCACACATTACGTGTGCCTCCGAGCATGCTTCACCTACCTATCCTTGATGCCATTAAGGGCGAGCTAGAGAAACTATTCCTGGATAAGGTGGTTGCA
AACTTGGGGCTCTGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGTGATGGCGCTGCAACATACAAGGTTGTGTTCAGGTTGATTGTGTT
TCGTCCATTCGTGGGGGAGATAGTTATTGGAAAAGTTAAAGAATCAGATGCAAATGGTTTGCGAATATCACTTGGATTTTTCGAGGACATTTATGTTCCCATCCATCTTC
TGCCCTCTCCATCTGAATTCATGCCCGATCCAAAAAATGGTGGAAAACGCAGATGGGTATGGGACTTTGACGGCGAACCATACGACATATATGAAACTGATGAGATAAAA
TTTAGAGTACACGGCATTGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGTAATTTAAAGTTCCCAATGGAGGAGCAACCACAAGAAAATAGAAATGTAAAAGC
ATTTGCTCCCATGATTGTTACTGTATGTCACTCACTCTCGACTTCTACCATTTACTCTACTTATCTTATTGATATATGTGCTTTATCTAAGAAAAATCTTATTGATATAT
ATGTGTGTAGCATTAGTTAAAGGGAAACTAGCTTGTAGTAGGGATGTCGATTTTTCCCGTAAAGATGAGCCTTGCAATATCCCGCACTTCACTTAGAGCTTGTTTAGATT
GGCTTTTCAAGTGCTTAAAAAATAATTTTTTTAATCACTTGAAAAGTCATTCGAAACAGATCTATGTAAAATCTCAATTCAACAGGGTGACAGAGACTGCCCTTGACCTT
AAAACACCTCGTTTCATTGTCATCCCTAATTTATAACTCAATATTATATCCATTCCATTGCATAGCAACTACCCTATTTAGGAGGTTTGGTTTTTTTGATGCAGGCATCA
ATTGATTTTGATGGTTTGGGACCTGTTTCATGGTGGGATGGTTCGGGAGATGCCGATGTCGATGCCGATGCCGAAGCCGAAGAAGATTCCTAAGGGTCAACATCCCATTT
TGTTACTATAACTTCTTTTTTTTTTTTTTTTGAAACTGTGTTACTATTACGAATTGGTATTCATTCATTCATAACTTGTATTATATATCATTATCACTAGGCATGGCATG
ATAGTCACTAGTCAGTGTACTTAACTCAACTTCATATTGTAACCGAATACAATTCTTTTCCAC

Protein sequence

Show/hide protein sequence

MFYISKIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFRLIVFRPFVGEIVIGKVKESDANGLRISLGFFEDIYVP
IHLLPSPSEFMPDPKNGGKRRWVWDFDGEPYDIYETDEIKFRVHGIEYPAIPVEQPKESNLKFPMEEQPQENRNVKAFAPMIVTVCHSLSTSTIYSTYLIDICALSKKNL
IDIYVCSIS

Tan0004798 (gene) of Snake gourd v1 genome