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Tan0004858 (gene) of Snake gourd v1 genome

Gene IDTan0004858
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationLG10:41645607..41646481
RNA-Seq ExpressionTan0004858
SyntenyTan0004858
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025749.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]3.7e-2779.49Show/hide
Query:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE
        MEAESSN+KKNEASKE +EKS+S+QCWKCKGFGHMSK+CVNK+VMVIRNG++DS+DEC+EHDAP EEES+  DDEY+E
Subjt:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]2.2e-2478.75Show/hide
Query:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE
        +E ESSN KK EASKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+RNGV+DSEDECEE+DA  EEE E   DDEY+EE
Subjt:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE

TYK06180.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]5.3e-2678.21Show/hide
Query:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE
        MEAESSN+KKNEASKE +EKS+S+QCWKCKGFGHMSK+CVNK+VMVIRNG++DS+DE +EHDAP EEES+  DDEY+E
Subjt:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.2e-2478.75Show/hide
Query:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE
        +E ESSN KK EASKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+RNGV+DSEDECEE+DA  EEE E   DDEY+EE
Subjt:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]2.2e-2478.75Show/hide
Query:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE
        +E ESSN KK EASKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+RNGV+DSEDECEE+DA  EEE E   DDEY+EE
Subjt:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE

TrEMBL top hitse value%identityAlignment
A0A5A7SKE7 Transposon Ty3-I Gag-Pol polyprotein1.8e-2779.49Show/hide
Query:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE
        MEAESSN+KKNEASKE +EKS+S+QCWKCKGFGHMSK+CVNK+VMVIRNG++DS+DEC+EHDAP EEES+  DDEY+E
Subjt:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein1.1e-2478.75Show/hide
Query:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE
        +E ESSN KK EASKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+RNGV+DSEDECEE+DA  EEE E   DDEY+EE
Subjt:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE

A0A5D3C4C3 Transposon Ty3-I Gag-Pol polyprotein2.6e-2678.21Show/hide
Query:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE
        MEAESSN+KKNEASKE +EKS+S+QCWKCKGFGHMSK+CVNK+VMVIRNG++DS+DE +EHDAP EEES+  DDEY+E
Subjt:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVE

A0A5D3C8C6 CCHC-type domain-containing protein1.1e-2478.75Show/hide
Query:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE
        +E ESSN KK EASKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+RNGV+DSEDECEE+DA  EEE E   DDEY+EE
Subjt:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE

A0A5D3CCP8 CCHC-type domain-containing protein1.1e-2478.75Show/hide
Query:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE
        +E ESSN KK EASKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+RNGV+DSEDECEE+DA  EEE E   DDEY+EE
Subjt:  MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEI-CDDEYVEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCCGAAAGCTCCAATGCTAAAAAGAATGAAGCTTCAAAGGAGGTAAGGGAAAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAA
AGAATGTGTCAATAAAAGAGTTATGGTGATAAGAAATGGTGTAGTTGATTCGGAGGATGAATGTGAGGAGCATGATGCACCATTTGAGGAAGAATCTGAAATATGTGATG
ATGAGTATGTTGAAGAAGAAAGAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCCGAAAGCTCCAATGCTAAAAAGAATGAAGCTTCAAAGGAGGTAAGGGAAAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAA
AGAATGTGTCAATAAAAGAGTTATGGTGATAAGAAATGGTGTAGTTGATTCGGAGGATGAATGTGAGGAGCATGATGCACCATTTGAGGAAGAATCTGAAATATGTGATG
ATGAGTATGTTGAAGAAGAAAGAATGTGA
Protein sequenceShow/hide protein sequence
MEAESSNAKKNEASKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVVDSEDECEEHDAPFEEESEICDDEYVEEERM