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Tan0004911 (gene) of Snake gourd v1 genome

Gene IDTan0004911
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUPF0047 protein YjbQ
Genome locationLG01:116935363..116937011
RNA-Seq ExpressionTan0004911
SyntenyTan0004911
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001602 - Uncharacterised protein family UPF0047


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591177.1 hypothetical protein SDJN03_13523, partial [Cucurbita argyrosperma subsp. sororia]4.1e-3583.52Show/hide
Query:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
        MQGAVLLAAQPLRVKLLW +N+S+GNPSATAG GNPSLMAAAGPKWAQKTV LPP RRGCHLIT KI KEIG+DLSEFKCGLAHIF + ++
Subjt:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
KAG7024064.1 yjbQ [Cucurbita argyrosperma subsp. argyrosperma]1.1e-3584.62Show/hide
Query:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
        MQGAVLLAAQPLRVKLLWS+N+S+GNPSATAG GNPSLMAAAGPKWAQKTV LPP RRGCHLIT KI KEIG+DLSEFKCGLAHIF + ++
Subjt:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
XP_008453044.1 PREDICTED: UPF0047 protein YjbQ [Cucumis melo]1.1e-3280.22Show/hide
Query:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
        MQGA++LAAQPLRVKLL S+N+S+GNPSATAG+ NPSLMAAAGPKWAQKTV L P RRGCHLIT KI KEIGQDLSEFKCGLAHIF + ++
Subjt:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
XP_022936473.1 uncharacterized protein LOC111443082 [Cucurbita moschata]1.1e-3584.62Show/hide
Query:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
        MQGAVLLAAQPLRVKLLWS+N+S+GNPSATAG GNPSLMAAAGPKWAQKTV LPP RRGCHLIT KI KEIG+DLSEFKCGLAHIF + ++
Subjt:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
XP_022976235.1 uncharacterized protein LOC111476694 [Cucurbita maxima]4.6e-3483.52Show/hide
Query:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
        MQGAVLLAAQPLRVKLL S+N+S+GNPSATAG GNPSLMAAAGPKWAQKTV LPP RRGCHLIT KI KEIG DLSEFKCGLAHIF + ++
Subjt:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
TrEMBL top hitse value%identityAlignment
A0A0A0L4Q6 Uncharacterized protein1.6e-3279.12Show/hide
Query:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
        MQGA++LAAQPLRVKLL S+N+S+GNPSATAG+ NPS MAAAGPKWAQKTV L P RRGCHLIT KI KEIGQDLSEFKCGLAHIF + ++
Subjt:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
A0A1S3BUP9 UPF0047 protein YjbQ5.5e-3380.22Show/hide
Query:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
        MQGA++LAAQPLRVKLL S+N+S+GNPSATAG+ NPSLMAAAGPKWAQKTV L P RRGCHLIT KI KEIGQDLSEFKCGLAHIF + ++
Subjt:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
A0A5D3D8K7 UPF0047 protein YjbQ5.5e-3380.22Show/hide
Query:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
        MQGA++LAAQPLRVKLL S+N+S+GNPSATAG+ NPSLMAAAGPKWAQKTV L P RRGCHLIT KI KEIGQDLSEFKCGLAHIF + ++
Subjt:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
A0A6J1FDC5 uncharacterized protein LOC1114430825.3e-3684.62Show/hide
Query:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
        MQGAVLLAAQPLRVKLLWS+N+S+GNPSATAG GNPSLMAAAGPKWAQKTV LPP RRGCHLIT KI KEIG+DLSEFKCGLAHIF + ++
Subjt:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
A0A6J1IIX0 uncharacterized protein LOC1114766942.2e-3483.52Show/hide
Query:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
        MQGAVLLAAQPLRVKLL S+N+S+GNPSATAG GNPSLMAAAGPKWAQKTV LPP RRGCHLIT KI KEIG DLSEFKCGLAHIF + ++
Subjt:  MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21065.1 unknown protein1.2e-1651.85Show/hide
Query:  PLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN
        PLRV+    S  +  NP+    T   S+ +++G KWAQKT+ LPP RRGCHLIT KI KEI +DLS+F CGLAH+F + ++
Subjt:  PLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGCGCTGTTCTCTTGGCTGCACAACCACTCCGCGTAAAGTTGCTGTGGAGCAGCAATACCAGTAGTGGTAATCCGTCCGCCACCGCAGGCACAGGTAATCCAAG
TTTGATGGCGGCCGCTGGTCCAAAGTGGGCTCAGAAGACTGTTAAGCTGCCTCCGCAGAGGCGGGGCTGTCATCTCATCACCGAGAAGATAACGAAGGAAATTGGGCAAG
ACTTGTCAGAATTCAAATGTGGCCTTGCTCACATCTTCTGTAAATCTTCTAATCCCATTTTTCTATTTCGGAGATTCTTTGTGATGCTAAGGAAGGTGCTGCCTGGATAT
GAGGGAGGAGGGATTGTGATAGATGTGCGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGGCGCTGTTCTCTTGGCTGCACAACCACTCCGCGTAAAGTTGCTGTGGAGCAGCAATACCAGTAGTGGTAATCCGTCCGCCACCGCAGGCACAGGTAATCCAAG
TTTGATGGCGGCCGCTGGTCCAAAGTGGGCTCAGAAGACTGTTAAGCTGCCTCCGCAGAGGCGGGGCTGTCATCTCATCACCGAGAAGATAACGAAGGAAATTGGGCAAG
ACTTGTCAGAATTCAAATGTGGCCTTGCTCACATCTTCTGTAAATCTTCTAATCCCATTTTTCTATTTCGGAGATTCTTTGTGATGCTAAGGAAGGTGCTGCCTGGATAT
GAGGGAGGAGGGATTGTGATAGATGTGCGGTAG
Protein sequenceShow/hide protein sequence
MQGAVLLAAQPLRVKLLWSSNTSSGNPSATAGTGNPSLMAAAGPKWAQKTVKLPPQRRGCHLITEKITKEIGQDLSEFKCGLAHIFCKSSNPIFLFRRFFVMLRKVLPGY
EGGGIVIDVR