; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0004931 (gene) of Snake gourd v1 genome

Gene IDTan0004931
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSmall nuclear ribonucleoprotein family protein
Genome locationLG05:77884516..77886693
RNA-Seq ExpressionTan0004931
SyntenyTan0004931
Gene Ontology termsGO:0031417 - NatC complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034110 - LSM domain containing 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011649337.1 uncharacterized protein LOC101206200 [Cucumis sativus]1.9e-5091.96Show/hide
Query:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGG +VQ GSNV+S P+SLD IGKVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_022140017.1 uncharacterized protein LOC111010777 [Momordica charantia]1.2e-4992.86Show/hide
Query:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES GP VQVGSNV+S P SLD I KVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STI EQLALLSV
Subjt:  STIDEQLALLSV

XP_022927243.1 uncharacterized protein LOC111434149 [Cucurbita moschata]2.3e-5191.96Show/hide
Query:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGG +VQVG NV+S PDSLDR+GKVRKLLFRRMLIGIKDGRFFLG+F+C+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023001494.1 uncharacterized protein LOC111495614 [Cucurbita maxima]1.9e-5090.18Show/hide
Query:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        M+QESGG +VQVGSNV+S PDSLDR+GKVRKLLFRRML+GIKDGRFFLG+F+C+DKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023520042.1 uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]5.9e-5292.86Show/hide
Query:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGG +VQVGSNV+S PDSLDR+GKVRKLLFRRMLIGIKDGRFFLG+F+C+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ5 Sm domain-containing protein9.2e-5191.96Show/hide
Query:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGG +VQ GSNV+S P+SLD IGKVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A5D3DAS2 Small nuclear ribonucleoprotein family protein isoform 26.6e-4990.18Show/hide
Query:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGG +VQ GSN +S  +SLD IGKVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1CFL8 uncharacterized protein LOC1110107776.0e-5092.86Show/hide
Query:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES GP VQVGSNV+S P SLD I KVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STI EQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1EKG3 uncharacterized protein LOC1114341491.1e-5191.96Show/hide
Query:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGG +VQVG NV+S PDSLDR+GKVRKLLFRRMLIGIKDGRFFLG+F+C+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1KMW6 uncharacterized protein LOC1114956149.2e-5190.18Show/hide
Query:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        M+QESGG +VQVGSNV+S PDSLDR+GKVRKLLFRRML+GIKDGRFFLG+F+C+DKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

SwissProt top hitse value%identityAlignment
P63162 Small nuclear ribonucleoprotein-associated protein N8.7e-0638.27Show/hide
Query:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

P63163 Small nuclear ribonucleoprotein-associated protein N8.7e-0638.27Show/hide
Query:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Q17QN3 Small nuclear ribonucleoprotein-associated protein N8.7e-0638.27Show/hide
Query:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Q55A45 Small nuclear ribonucleoprotein-associated protein B5.1e-0632.95Show/hide
Query:  LDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL
        + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+ILI     VS  V++   E+  L
Subjt:  LDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL

Q60HD3 Small nuclear ribonucleoprotein-associated protein N8.7e-0638.27Show/hide
Query:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Arabidopsis top hitse value%identityAlignment
AT4G18372.1 Small nuclear ribonucleoprotein family protein6.8e-3878.65Show/hide
Query:  DRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
        D I ++RKLLFR+ML+GIKDGRFFLG FHCIDKQGNIILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD +IDEQL+L+ +
Subjt:  DRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV

AT4G20440.3 small nuclear ribonucleoprotein associated protein B1.7e-0427.38Show/hide
Query:  SLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ +    ++R LGL+L+     +S  V+
Subjt:  SLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD

AT5G44500.2 Small nuclear ribonucleoprotein family protein2.6e-0528.24Show/hide
Query:  SLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYR------STRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R        ++++    E+R LGL+L+     +S  V+
Subjt:  SLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYR------STRRSSPSPMEQRCLGLILIPNSCRVSCHVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCAAGAATCAGGAGGACCCGTGGTTCAGGTTGGGAGCAATGTTGACTCTATCCCAGACAGTTTAGATCGCATAGGAAAGGTGAGAAAGCTGTTGTTCCGTCGAAT
GCTCATAGGCATTAAAGATGGAAGGTTTTTCTTGGGTACCTTCCACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGACGCAGTAGAGTATCGTAGCACTCGGCGTA
GCTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTAGCCCTGCTA
TCAGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATTTTCCCCAAAAACCAAAAAAAAAAAAAATTGTGTTTTTTGATTTACTGTTTCTTGTCTCTCCCCTCATCCACGAAAAGAGCACAGAATTGCAATCGCCCGCCAAGTTC
GCCTCTGTTCTTCCGGCTTCCACCGTCCCTCTCTCTTTCTCTTCTGCGGGGATCAGTTGAAGTAACCATACATGGAGCAAGAATCAGGAGGACCCGTGGTTCAGGTTGGG
AGCAATGTTGACTCTATCCCAGACAGTTTAGATCGCATAGGAAAGGTGAGAAAGCTGTTGTTCCGTCGAATGCTCATAGGCATTAAAGATGGAAGGTTTTTCTTGGGTAC
CTTCCACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGACGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTA
TTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTAGCCCTGCTATCAGTCTAGCAAATAAGAGCAAGCCTGATAGTTAGAACT
TAAGATGGAGGGATAAAGAAAAAACTCTGCACACATGTTTGGAATAGAATGTTTATGATTGTTTCTATTTGGACAGGAAAATACTAATGCAATATGTTCTTTTAGTGGAA
ATATGGGAGAAGGAAATACATTTTTTCCCCTTGAAAATTATGGATAACCAC
Protein sequenceShow/hide protein sequence
MEQESGGPVVQVGSNVDSIPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL
SV