; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0004932 (gene) of Snake gourd v1 genome

Gene IDTan0004932
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG01:109074771..109080555
RNA-Seq ExpressionTan0004932
SyntenyTan0004932
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025450.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-1445.69Show/hide
Query:  NRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGK-ITFPSLQPSETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLK
        +RSREIQ  E      +A  I  ++++  ++   I ENL   +  + P     E   P++MSV++TD   SE++M E EKK+NML++T+EERD+EI SLK
Subjt:  NRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGK-ITFPSLQPSETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLK

Query:  NQIESRDAAESSPTFD
        N IESRDAA+S  TFD
Subjt:  NQIESRDAAESSPTFD

KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-1449.11Show/hide
Query:  NRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGK-ITFPSLQPSETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLK
        +RSREIQ  E   P  +A  I  ++++  +    I EN    +  +F      E + P++MSVM+TD   SE +MVE EKK+NML+K +EERDYEI SLK
Subjt:  NRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGK-ITFPSLQPSETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLK

Query:  NQIESRDAAESS
        N IESRDAAESS
Subjt:  NQIESRDAAESS

KAA0043321.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.4e-1447.79Show/hide
Query:  NRSREIQPEESQTPVIANKILRRMTESAQANATIAENLVFGKITFPSLQPS-ETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLKN
        +RSREIQ  E   P    KI  ++++  +    I EN    +    S + + E S P++MSVM+TD   SE++M E EKK+NML+K +EERD+EI  LKN
Subjt:  NRSREIQPEESQTPVIANKILRRMTESAQANATIAENLVFGKITFPSLQPS-ETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLKN

Query:  QIESRDAAESSPT
         IESRDAAESS T
Subjt:  QIESRDAAESSPT

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-1346.49Show/hide
Query:  NRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGKITFPSLQPSETS-SPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLK
        +RSR+IQ  E   P  +AN I  ++++  +    I EN    +    S + +E +  P++MSVM+TD   SE++M E EKK+NML+K +EERD+EI SLK
Subjt:  NRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGKITFPSLQPSETS-SPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLK

Query:  NQIESRDAAESSPT
        N IESRDA ESS T
Subjt:  NQIESRDAAESSPT

KAA0063235.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-1344.44Show/hide
Query:  KSIKKINRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGKITFP-SLQPSETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDY
        K  K  +RSRE Q  +   P  +AN I  + ++  +    I ENLV  K      L   ET  P++MSVM TD   S ++M E EKKINML+K +EERDY
Subjt:  KSIKKINRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGKITFP-SLQPSETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDY

Query:  EITSLKNQIESRDAAESSPTFDSTQS
        EI  LKN +ES DA ESS T+ +  +
Subjt:  EITSLKNQIESRDAAESSPTFDSTQS

TrEMBL top hitse value%identityAlignment
A0A5A7TP10 Ty3-gypsy retrotransposon protein2.1e-1447.79Show/hide
Query:  NRSREIQPEESQTPVIANKILRRMTESAQANATIAENLVFGKITFPSLQPS-ETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLKN
        +RSREIQ  E   P    KI  ++++  +    I EN    +    S + + E S P++MSVM+TD   SE++M E EKK+NML+K +EERD+EI  LKN
Subjt:  NRSREIQPEESQTPVIANKILRRMTESAQANATIAENLVFGKITFPSLQPS-ETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLKN

Query:  QIESRDAAESSPT
         IESRDAAESS T
Subjt:  QIESRDAAESSPT

A0A5A7U9H0 Ty3-gypsy retrotransposon protein8.1e-1446.49Show/hide
Query:  NRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGKITFPSLQPSETS-SPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLK
        +RSR+IQ  E   P  +AN I  ++++  +    I EN    +    S + +E +  P++MSVM+TD   SE++M E EKK+NML+K +EERD+EI SLK
Subjt:  NRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGKITFPSLQPSETS-SPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLK

Query:  NQIESRDAAESSPT
        N IESRDA ESS T
Subjt:  NQIESRDAAESSPT

A0A5A7VBF4 Ty3-gypsy retrotransposon protein1.1e-1344.44Show/hide
Query:  KSIKKINRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGKITFP-SLQPSETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDY
        K  K  +RSRE Q  +   P  +AN I  + ++  +    I ENLV  K      L   ET  P++MSVM TD   S ++M E EKKINML+K +EERDY
Subjt:  KSIKKINRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGKITFP-SLQPSETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDY

Query:  EITSLKNQIESRDAAESSPTFDSTQS
        EI  LKN +ES DA ESS T+ +  +
Subjt:  EITSLKNQIESRDAAESSPTFDSTQS

A0A5D3C0N7 Ty3-gypsy retrotransposon protein1.3e-1445.69Show/hide
Query:  NRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGK-ITFPSLQPSETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLK
        +RSREIQ  E      +A  I  ++++  ++   I ENL   +  + P     E   P++MSV++TD   SE++M E EKK+NML++T+EERD+EI SLK
Subjt:  NRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGK-ITFPSLQPSETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLK

Query:  NQIESRDAAESSPTFD
        N IESRDAA+S  TFD
Subjt:  NQIESRDAAESSPTFD

A0A5D3C4W1 Ty3-gypsy retrotransposon protein1.3e-1449.11Show/hide
Query:  NRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGK-ITFPSLQPSETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLK
        +RSREIQ  E   P  +A  I  ++++  +    I EN    +  +F      E + P++MSVM+TD   SE +MVE EKK+NML+K +EERDYEI SLK
Subjt:  NRSREIQPEESQTPV-IANKILRRMTESAQANATIAENLVFGK-ITFPSLQPSETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLK

Query:  NQIESRDAAESS
        N IESRDAAESS
Subjt:  NQIESRDAAESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGATATGTACAAAGAAGTAGTATTTATAGACTTAATTTTCAAAAACAAAATGTTATCAAACATGACCTAATCCAGAGAATTCAAAAGATCCAAAGATCCAGAAC
TCAGAAGATTCAACGACTTAAAAGCTTCTGCAAATTGATCGTCTCTTCATCAACTACAGATCGAAGATTCAATCTCCCTCCATCTGAGAACAAGCTTGCCAGTCCTCAGA
TCAAAATTCATATTCCGAGAGAAAGCATCAGAGGATTACACATTAGAGATTGTAACACTTCACAAAAATCAATAAAAAAAATCAATCGCTCTAGAGAAATCCAACCTGAA
GAAAGTCAAACACCTGTCATCGCAAACAAAATACTTAGACGAATGACAGAATCTGCTCAAGCTAATGCCACCATCGCAGAAAACCTCGTGTTTGGCAAAATCACTTTTCC
TTCTCTTCAACCAAGTGAAACATCAAGCCCTGACGTGATGTCCGTTATGATGACTGATGCAGGCATTAGTGAGGAAAAAATGGTTGAATTTGAAAAGAAGATCAACATGT
TATTGAAGACAATTGAAGAAAGAGATTATGAAATCACTTCTCTCAAGAATCAGATTGAAAGTCGTGATGCTGCTGAATCAAGTCCTACTTTTGACTCCACCCAATCTTCG
ATCCGTCAGAGGTTAAGAATGCCCACTGGTAAAGAAAAAAGAACGTTAATGACTCCAACTATGGTGCAACCATCAACATTGCAACAATTAGGCACATTTACGAAAGAGAG
GAAAAATATACCTTCGACTTCAAATGTGACACGCCCTTCAGCTTTTCACAGATTAAGTGTAGCCACGTCAAAAAGTGAGGGTTCTTCCATGTCAGTTTTTGACCGACTTT
AA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGATATGTACAAAGAAGTAGTATTTATAGACTTAATTTTCAAAAACAAAATGTTATCAAACATGACCTAATCCAGAGAATTCAAAAGATCCAAAGATCCAGAAC
TCAGAAGATTCAACGACTTAAAAGCTTCTGCAAATTGATCGTCTCTTCATCAACTACAGATCGAAGATTCAATCTCCCTCCATCTGAGAACAAGCTTGCCAGTCCTCAGA
TCAAAATTCATATTCCGAGAGAAAGCATCAGAGGATTACACATTAGAGATTGTAACACTTCACAAAAATCAATAAAAAAAATCAATCGCTCTAGAGAAATCCAACCTGAA
GAAAGTCAAACACCTGTCATCGCAAACAAAATACTTAGACGAATGACAGAATCTGCTCAAGCTAATGCCACCATCGCAGAAAACCTCGTGTTTGGCAAAATCACTTTTCC
TTCTCTTCAACCAAGTGAAACATCAAGCCCTGACGTGATGTCCGTTATGATGACTGATGCAGGCATTAGTGAGGAAAAAATGGTTGAATTTGAAAAGAAGATCAACATGT
TATTGAAGACAATTGAAGAAAGAGATTATGAAATCACTTCTCTCAAGAATCAGATTGAAAGTCGTGATGCTGCTGAATCAAGTCCTACTTTTGACTCCACCCAATCTTCG
ATCCGTCAGAGGTTAAGAATGCCCACTGGTAAAGAAAAAAGAACGTTAATGACTCCAACTATGGTGCAACCATCAACATTGCAACAATTAGGCACATTTACGAAAGAGAG
GAAAAATATACCTTCGACTTCAAATGTGACACGCCCTTCAGCTTTTCACAGATTAAGTGTAGCCACGTCAAAAAGTGAGGGTTCTTCCATGTCAGTTTTTGACCGACTTT
AA
Protein sequenceShow/hide protein sequence
MKRYVQRSSIYRLNFQKQNVIKHDLIQRIQKIQRSRTQKIQRLKSFCKLIVSSSTTDRRFNLPPSENKLASPQIKIHIPRESIRGLHIRDCNTSQKSIKKINRSREIQPE
ESQTPVIANKILRRMTESAQANATIAENLVFGKITFPSLQPSETSSPDVMSVMMTDAGISEEKMVEFEKKINMLLKTIEERDYEITSLKNQIESRDAAESSPTFDSTQSS
IRQRLRMPTGKEKRTLMTPTMVQPSTLQQLGTFTKERKNIPSTSNVTRPSAFHRLSVATSKSEGSSMSVFDRL