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Tan0004951 (gene) of Snake gourd v1 genome

Gene IDTan0004951
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUbiquitin-like protein ATG12
Genome locationLG04:87490606..87492966
RNA-Seq ExpressionTan0004951
SyntenyTan0004951
Gene Ontology termsGO:0000045 - autophagosome assembly (biological process)
GO:0000422 - autophagy of mitochondrion (biological process)
GO:0006501 - C-terminal protein lipidation (biological process)
GO:0044804 - autophagy of nucleus (biological process)
GO:0034045 - phagophore assembly site membrane (cellular component)
GO:0034274 - Atg12-Atg5-Atg16 complex (cellular component)
InterPro domainsIPR007242 - Ubiquitin-like protein Atg12
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151012.1 ubiquitin-like protein ATG12 [Cucumis sativus]3.9e-4495.79Show/hide
Query:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STESS+SARKVV+LLRATGDAPILKQTKFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_008464001.1 PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo]5.0e-4495.79Show/hide
Query:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STESS SARKVV+LLRATGDAPILKQTKFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_022955552.1 ubiquitin-like protein ATG12 [Cucurbita moschata]6.2e-4291.58Show/hide
Query:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESS+SA+KVV+LLR+ GDAPILKQ KFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_022980759.1 ubiquitin-like protein ATG12 [Cucurbita maxima]3.6e-4291.58Show/hide
Query:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESSNS++KVV+LLR+ GDAPILKQ KFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_038878493.1 ubiquitin-like protein ATG12 [Benincasa hispida]1.3e-4496.84Show/hide
Query:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MASTESS+SARKVV+LLRATGDAPILKQTKFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

TrEMBL top hitse value%identityAlignment
A0A0A0LIA6 Ubiquitin-like protein ATG121.9e-4495.79Show/hide
Query:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STESS+SARKVV+LLRATGDAPILKQTKFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A1S3CKI1 Ubiquitin-like protein ATG122.4e-4495.79Show/hide
Query:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STESS SARKVV+LLRATGDAPILKQTKFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1DGR5 Ubiquitin-like protein ATG123.9e-4292.63Show/hide
Query:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESS+S RKVV+LLRATGDAPILKQTKFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1GTZ1 Ubiquitin-like protein ATG123.0e-4291.58Show/hide
Query:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESS+SA+KVV+LLR+ GDAPILKQ KFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1J054 Ubiquitin-like protein ATG121.8e-4291.58Show/hide
Query:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESSNS++KVV+LLR+ GDAPILKQ KFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

SwissProt top hitse value%identityAlignment
A2YAG8 Ubiquitin-like protein ATG125.6e-3068.24Show/hide
Query:  RKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +KVV+  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP PDE +IDLYNNFGIDG+LVVNYA SMAWG
Subjt:  RKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q1SF86 Ubiquitin-like protein ATG122.8e-3776.84Show/hide
Query:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MA+ ES  S RKVV+ LRATGDAPILKQ+KFK+ GTDKF KVID++RR + R++LFV+VNSAFSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q69NP0 Ubiquitin-like protein ATG125.6e-3068.24Show/hide
Query:  RKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +KVV+  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP PDE +IDLYNNFGIDG+LVVNYA SMAWG
Subjt:  RKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q8S924 Ubiquitin-like protein ATG12A3.1e-3676.84Show/hide
Query:  STESS--NSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TESS  +S RKVV+ LRATG APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESS--NSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q9LVK3 Ubiquitin-like protein ATG12B3.4e-3573.12Show/hide
Query:  STESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TES NS +K+V+ LRATG APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Arabidopsis top hitse value%identityAlignment
AT1G54210.1 Ubiquitin-like superfamily protein2.2e-3776.84Show/hide
Query:  STESS--NSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TESS  +S RKVV+ LRATG APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESS--NSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

AT1G54210.2 Ubiquitin-like superfamily protein6.6e-1043.16Show/hide
Query:  STESS--NSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TESS  +S RKVV+ LRATG APILKQ+KFK                                            NFG DGKLVVNYACSMAWG
Subjt:  STESS--NSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

AT3G13970.1 Ubiquitin-like superfamily protein2.4e-3673.12Show/hide
Query:  STESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TES NS +K+V+ LRATG APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAACGGAGTCGTCGAATTCAGCTCGAAAAGTGGTTATTCTGCTGAGAGCTACTGGGGATGCTCCCATTCTCAAACAAACCAAGTTTAAGATGCCTGGAACAGA
CAAATTTGTTAAAGTTATTGATTACATACGCCGGTCAATTCAACGAGACACCTTGTTTGTGTTTGTCAACAGTGCATTCTCACCAGGTCCAGATGAGACAGTTATTGATC
TATATAATAACTTTGGAATTGACGGGAAATTGGTGGTAAATTATGCCTGCTCCATGGCCTGGGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAACGGAGTCGTCGAATTCAGCTCGAAAAGTGGTTATTCTGCTGAGAGCTACTGGGGATGCTCCCATTCTCAAACAAACCAAGTTTAAGATGCCTGGAACAGA
CAAATTTGTTAAAGTTATTGATTACATACGCCGGTCAATTCAACGAGACACCTTGTTTGTGTTTGTCAACAGTGCATTCTCACCAGGTCCAGATGAGACAGTTATTGATC
TATATAATAACTTTGGAATTGACGGGAAATTGGTGGTAAATTATGCCTGCTCCATGGCCTGGGGCTAATATGCTGTATGGTAATGCTTAGTGCTGAGGCTGTAAATAGTA
TATTGAACAGTTCATTCTAAGTGCTGTGACTTTAAACTCATCCATTTATTTTTTTTACGAACTACACATTTAAGCTGCTTTCCCAGATGGAAAAACACAATAAGTCGAGT
TCTAGAGTCATATTTGTGAAGGTCCAGAGTCTGTAATTATTTATTTATTTATTTGATAAACCTCTTTAATTAATTGTTTTAACATAGAATATGAAAGCAAAGGATATTTT
GTTCCAAACAATGATATGTAAGCTCAAACTCCTGATTAG
Protein sequenceShow/hide protein sequence
MASTESSNSARKVVILLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG