CuGenDBv2

Gene ID	Tan0004954
Organism	Trichosanthes anguina (Snake gourd v1)
Description	F-box protein SNE-like
Genome location	LG02:4386626..4387363
RNA-Seq Expression	Tan0004954
Synteny	Tan0004954
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6572228.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-64

83.65

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Query:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP
        MQ NA +    K  NN KKIKF+INDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSP  SSV P+++ALGGYKRLYMLCLRP
Subjt:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP

Query:  VLSRLNRSDLVRRVWTLQDQVQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKP
        VLSRLNRS LV RV TLQDQVQ LSLSLF VDYYERNG LGGDAA  A APSLRFLCKP
Subjt:  VLSRLNRSDLVRRVWTLQDQVQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKP

KAG7011864.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.1e-66

83.95

Show/hide

Query:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP
        MQ NA +    K  NN KKIKF+INDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSP  SSV P+++ALGGYKRLYMLCLRP
Subjt:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP

Query:  VLSRLNRSDLVRRVWTLQDQVQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV
        VLSRLNRS LV RV TLQDQVQ LSLSLF VDYYERNG LGGDAA  A APSLRFLCKPVNV
Subjt:  VLSRLNRSDLVRRVWTLQDQVQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV

XP_022136160.1 F-box protein SNE-like [Momordica charantia]

8.5e-60

74.85

Show/hide

Query:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP
        MQRNA E      +  KK  KF+INDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH SSPPPS++  VV+ALGGYKRLYMLCLRP
Subjt:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP

Query:  VLSRLN--RSDLVRRVWTLQDQVQLSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV
        +L+  N  RS  VRRV TLQD +QLSLSLFSVD YER+G + GDAA  A APSLRFLCKPVNV
Subjt:  VLSRLN--RSDLVRRVWTLQDQVQLSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV

XP_022952371.1 F-box protein SNE-like [Cucurbita moschata]

5.5e-67

84.57

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Query:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP
        MQ NA +    K  NN KKIKF+INDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPP SSV P+++ALGGYKRLYMLCLRP
Subjt:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP

Query:  VLSRLNRSDLVRRVWTLQDQVQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV
        VLSRLNRS LV RV TLQDQVQ LSLSLF VDYYERNG LGGDAA  A APSLRFLCKPVNV
Subjt:  VLSRLNRSDLVRRVWTLQDQVQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV

XP_022969281.1 F-box protein SNE-like [Cucurbita maxima]

3.6e-66

83.95

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Query:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP
        MQ NA +    K  NN KKIKF+INDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCF HVSSPP SSV P+++ALGGYKRLYMLCLRP
Subjt:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP

Query:  VLSRLNRSDLVRRVWTLQDQVQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV
        VLSRLNRS LV RV TLQDQVQ LSLSLF VDYYERNG LGGDAA  A APSLRFLCKPVNV
Subjt:  VLSRLNRSDLVRRVWTLQDQVQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV

TrEMBL top hits

e value

%identity

Alignment

A0A5N6RCK8 F-box domain-containing protein

2.9e-53

75.66

Show/hide

Query:  EKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDL
        +K    +KK KF INDH DILTEILKRLDGPSL  AACVCRLWCA+ARN DSLWEHLCFRHV+SPPPSSV PVV+ALGGYKRLYM+C+RPVL+RL  SDL
Subjt:  EKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDL

Query:  V-RRVWTLQDQVQLSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV
        V RRVWT +D+VQLSLSLF VDYYER   LGG     A A SL FLCKPVNV
Subjt:  V-RRVWTLQDQVQLSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV

A0A6J1C339 F-box protein SNE-like

4.1e-60

74.85

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Query:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP
        MQRNA E      +  KK  KF+INDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH SSPPPS++  VV+ALGGYKRLYMLCLRP
Subjt:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP

Query:  VLSRLN--RSDLVRRVWTLQDQVQLSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV
        +L+  N  RS  VRRV TLQD +QLSLSLFSVD YER+G + GDAA  A APSLRFLCKPVNV
Subjt:  VLSRLN--RSDLVRRVWTLQDQVQLSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV

A0A6J1GK18 F-box protein SNE-like

2.7e-67

84.57

Show/hide

Query:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP
        MQ NA +    K  NN KKIKF+INDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPP SSV P+++ALGGYKRLYMLCLRP
Subjt:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP

Query:  VLSRLNRSDLVRRVWTLQDQVQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV
        VLSRLNRS LV RV TLQDQVQ LSLSLF VDYYERNG LGGDAA  A APSLRFLCKPVNV
Subjt:  VLSRLNRSDLVRRVWTLQDQVQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV

A0A6J1HXD0 F-box protein SNE-like

1.7e-66

83.95

Show/hide

Query:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP
        MQ NA +    K  NN KKIKF+INDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCF HVSSPP SSV P+++ALGGYKRLYMLCLRP
Subjt:  MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRP

Query:  VLSRLNRSDLVRRVWTLQDQVQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV
        VLSRLNRS LV RV TLQDQVQ LSLSLF VDYYERNG LGGDAA  A APSLRFLCKPVNV
Subjt:  VLSRLNRSDLVRRVWTLQDQVQ-LSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV

A0A6P4BI13 F-box protein SNE

2.2e-53

73.12

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Query:  QENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRL
        Q+N  E     +K+ +F INDH+DIL EILKRLDGPSL AAACVCRLWCA+ RN DSLWEHLCFRHVSSPPPSSV PVVVALGGYKRLYM+C+R VLSRL
Subjt:  QENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRL

Query:  NRSDLVRRVWTLQDQVQLSLSLFSVDYYER----NGCLGGDAAAVAVAPSLRFLCKPVNV
          SDLVRRVWT  D+VQLSLSLF VDYYER    +G LGG  A+   A SL FLCKPVNV
Subjt:  NRSDLVRRVWTLQDQVQLSLSLFSVDYYER----NGCLGGDAAAVAVAPSLRFLCKPVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

1.2e-11

39.32

Show/hide

Query:  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPS--SVHPVVVALGGYKRLYMLCLRPVLSR---LNRSDLVRR--VWTLQDQV
        D++ E+L+R +  +L AAACV R W  LA  D+ LWE  C R  ++   S   +  VV++LGG++RL+ + +RP+  R   + R    R+  V   +DQV
Subjt:  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPS--SVHPVVVALGGYKRLYMLCLRPVLSR---LNRSDLVRR--VWTLQDQV

Query:  QLSLSLFSVDYYERNGC
        QLSLSLFS+ +++   C
Subjt:  QLSLSLFSVDYYERNGC

Q9LUB6 F-box protein SNE

1.4e-36

56.69

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Query:  EKTMNNKKKIK----FAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLN
        EK+ N ++++     F+INDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE LCFR VS  P  S+  VV ALGGY+ LY LC+RPVL+R  
Subjt:  EKTMNNKKKIK----FAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLN

Query:  RSDLVRRVWTLQDQVQLSLSLFSVDYYER--NGCLGGDAAAVAVAPSLRFLCKPVNV
           L + +WT +DQ+QLSLSL+ V YYER   G   GDA       SL FL KPVNV
Subjt:  RSDLVRRVWTLQDQVQLSLSLFSVDYYER--NGCLGGDAAAVAVAPSLRFLCKPVNV

Q9STX3 F-box protein GID2

1.7e-10

36.7

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Query:  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQVQLSLS
        +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +C RH ++     + +  VV+ALGG++RL+ L L P LS+ N      R    +D+++L+LS
Subjt:  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQVQLSLS

Query:  LFSVDYYER
        L S+ YYE+
Subjt:  LFSVDYYER

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.2e-11

36.7

Show/hide

Query:  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQVQLSLS
        +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +C RH ++     + +  VV+ALGG++RL+ L L P LS+ N      R    +D+++L+LS
Subjt:  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDLVRRVWTLQDQVQLSLS

Query:  LFSVDYYER
        L S+ YYE+
Subjt:  LFSVDYYER

AT5G48170.1 F-box family protein

9.8e-38

56.69

Show/hide

Query:  EKTMNNKKKIK----FAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLN
        EK+ N ++++     F+INDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE LCFR VS  P  S+  VV ALGGY+ LY LC+RPVL+R  
Subjt:  EKTMNNKKKIK----FAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLN

Query:  RSDLVRRVWTLQDQVQLSLSLFSVDYYER--NGCLGGDAAAVAVAPSLRFLCKPVNV
           L + +WT +DQ+QLSLSL+ V YYER   G   GDA       SL FL KPVNV
Subjt:  RSDLVRRVWTLQDQVQLSLSLFSVDYYER--NGCLGGDAAAVAVAPSLRFLCKPVNV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCAGCGAAATGCACAAGAAAATTACGGAGAGAAGACGATGAACAACAAAAAGAAAATCAAATTCGCAATCAACGATCACCTCGATATCCTCACCGAAATCCTCAAGCG
ACTCGACGGTCCCTCCCTCTGCGCCGCCGCTTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCATCTCTGCTTTCGCCACGTCTCCT
CGCCGCCACCGTCCTCCGTCCACCCTGTCGTCGTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTTCGTCCTGTTCTCAGCCGATTAAATCGCTCCGATTTG
GTCCGCCGCGTTTGGACTCTGCAAGATCAGGTCCAACTCTCGCTCTCCCTGTTCTCCGTTGATTATTACGAGAGAAACGGTTGCCTCGGCGGCGATGCGGCGGCGGTGGC
AGTGGCTCCGTCGTTGAGATTCCTCTGCAAACCGGTGAACGTATAA

mRNA sequence

Show/hide mRNA sequence

GTCAAATCCATTGAAGCCCCTTTTTTAAAAACCCATTAACTCAATAAATTCCTCTCTCAATCATCAAGAACAAGAAGAAGAACAAGAAGAAGCTTAATCATGCAGCGAAA
TGCACAAGAAAATTACGGAGAGAAGACGATGAACAACAAAAAGAAAATCAAATTCGCAATCAACGATCACCTCGATATCCTCACCGAAATCCTCAAGCGACTCGACGGTC
CCTCCCTCTGCGCCGCCGCTTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCATCTCTGCTTTCGCCACGTCTCCTCGCCGCCACCG
TCCTCCGTCCACCCTGTCGTCGTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTTCGTCCTGTTCTCAGCCGATTAAATCGCTCCGATTTGGTCCGCCGCGT
TTGGACTCTGCAAGATCAGGTCCAACTCTCGCTCTCCCTGTTCTCCGTTGATTATTACGAGAGAAACGGTTGCCTCGGCGGCGATGCGGCGGCGGTGGCAGTGGCTCCGT
CGTTGAGATTCCTCTGCAAACCGGTGAACGTATAATTTGTTTGTTTCTTTGTTTCTTTGTTCTCATCCTTTTTTCGTTCCATTCTGAAACGTTTTTGAATTGATTCGTCT
CATTGGACAATAACCGTGAGGGAATTCACTTGTTTTTCTCTGGATTTATTTCAATTTTTTATTAAATAAATTAATATT

Protein sequence

Show/hide protein sequence

MQRNAQENYGEKTMNNKKKIKFAINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVHPVVVALGGYKRLYMLCLRPVLSRLNRSDL
VRRVWTLQDQVQLSLSLFSVDYYERNGCLGGDAAAVAVAPSLRFLCKPVNV

Tan0004954 (gene) of Snake gourd v1 genome