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Tan0004982 (gene) of Snake gourd v1 genome

Gene IDTan0004982
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG01:57422820..57423041
RNA-Seq ExpressionTan0004982
SyntenyTan0004982
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]2.5e-1968.49Show/hide
Query:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL
        MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQVSFIL++L +SFL
Subjt:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL

KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-1969.86Show/hide
Query:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL
        MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQVSFIL++LS+SFL
Subjt:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]2.5e-1968.49Show/hide
Query:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL
        MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQVSFIL++L +SFL
Subjt:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]2.5e-1968.49Show/hide
Query:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL
        MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQVSFIL++L +SFL
Subjt:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL

TYK28896.1 gag/pol protein [Cucumis melo var. makuwa]8.7e-2069.86Show/hide
Query:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL
        MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQVSFILK+L +SFL
Subjt:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein1.2e-1968.49Show/hide
Query:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL
        MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQVSFIL++L +SFL
Subjt:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL

A0A5A7TYF5 Gag/pol protein5.5e-2069.86Show/hide
Query:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL
        MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQVSFIL++LS+SFL
Subjt:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL

A0A5A7V4M1 Gag/pol protein1.2e-1968.49Show/hide
Query:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL
        MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQVSFIL++L +SFL
Subjt:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL

A0A5D3CPJ6 Gag/pol protein1.2e-1968.49Show/hide
Query:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL
        MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQVSFIL++L +SFL
Subjt:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL

A0A5D3DYU3 Gag/pol protein4.2e-2069.86Show/hide
Query:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL
        MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQVSFILK+L +SFL
Subjt:  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAGTGCATGGTATGTTTGGACAACAGTCTACACAGGTCCGACACAATGCCCTCAAGTATATATTCAACTCGAAGATGCTAGAGGGTACATCTGTTCGGGATCA
TGTCCTGGATATGATGGTACACTTTAACATCGCTGAGTCGAATGGTGCTTCCATCGATGAATCGAGCCAAGTCAGCTTCATTCTGAAAACTCTTTCAGATAGTTTCCTAT
AG
mRNA sequenceShow/hide mRNA sequence
ATGGATTCAGTGCATGGTATGTTTGGACAACAGTCTACACAGGTCCGACACAATGCCCTCAAGTATATATTCAACTCGAAGATGCTAGAGGGTACATCTGTTCGGGATCA
TGTCCTGGATATGATGGTACACTTTAACATCGCTGAGTCGAATGGTGCTTCCATCGATGAATCGAGCCAAGTCAGCTTCATTCTGAAAACTCTTTCAGATAGTTTCCTAT
AG
Protein sequenceShow/hide protein sequence
MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL