; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0005020 (gene) of Snake gourd v1 genome

Gene IDTan0005020
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSOSS complex subunit B homolog
Genome locationLG06:7351268..7353155
RNA-Seq ExpressionTan0005020
SyntenyTan0005020
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0010212 - response to ionizing radiation (biological process)
GO:0070876 - SOSS complex (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150258.1 SOSS complex subunit B homolog [Momordica charantia]4.1e-6389.13Show/hide
Query:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF
        MISLK+LVPAAQNNVNA+FIV++KGKTT EGQNKAC +LV D+TAAVHFQLWGDECD VEPSDIIRLTNGIFSY+R NNLVLRAGKRGKIEKVGEFNMVF
Subjt:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPPNH
        VETPNMSEI WVPDT DSKKYVKESVLSPYSRIFPPN+
Subjt:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPPNH

XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]2.2e-6488.97Show/hide
Query:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF
        MISLK+LVPAAQNNVN +FIV+EKG TT+EGQNK CQ+LV D+TAAVHFQLWG+ECDVVEPSDI+RLTNGIFSY+RN+NLVLRAGKRGKIEKVGEFNMVF
Subjt:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVPDTT+SKKYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

XP_022968811.1 SOSS complex subunit B homolog [Cucurbita maxima]4.1e-6386.76Show/hide
Query:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF
        MISLK+LVPAAQNNVN +FIV+EKG TT++GQNK CQ+LV D+TAAVHFQLWG+ECDVVEPSDI+RL NGIFSY+RNNNLVLRAGKRGKIEKVGEFNMVF
Subjt:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVPDT++SKKYVKESV+SPYSRIFPP
Subjt:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]7.5e-6588.97Show/hide
Query:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF
        MISLK+LVPAAQNNVN +FIV++KG TTIEGQNK CQ+LV D+TAAVHFQLWG+ECDVVEPSDI+RLTNGIFSY+RNNNLVLRAGKRGK+EKVGEFNMVF
Subjt:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVPDTT+SKKYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]8.3e-6488.97Show/hide
Query:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF
        MI+LK+LVPAAQNNVN +FIV+EKG T +EGQNKACQ+LV D+TAAVHFQLWGDECDVVEPSDIIRLTNGIFSY+RNNNLVLRAGKRGKIEKVGEF MVF
Subjt:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVPDTT+S KYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

TrEMBL top hitse value%identityAlignment
A0A1S3BPN4 SOSS complex subunit B homolog9.9e-6387.5Show/hide
Query:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF
        MI LK+LVPAAQN VN +FIV+EKG TT+EGQNK CQ+LV D+TAAVHFQLWGDECDVVEPSDIIRLTNGIFSY+RNNNLVLRAGKRGKIEKVGEF MVF
Subjt:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVPDT +S KYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

A0A5D3CIR3 SOSS complex subunit B-like protein9.9e-6387.5Show/hide
Query:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF
        MI LK+LVPAAQN VN +FIV+EKG TT+EGQNK CQ+LV D+TAAVHFQLWGDECDVVEPSDIIRLTNGIFSY+RNNNLVLRAGKRGKIEKVGEF MVF
Subjt:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVPDT +S KYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

A0A6J1D803 SOSS complex subunit B homolog2.0e-6389.13Show/hide
Query:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF
        MISLK+LVPAAQNNVNA+FIV++KGKTT EGQNKAC +LV D+TAAVHFQLWGDECD VEPSDIIRLTNGIFSY+R NNLVLRAGKRGKIEKVGEFNMVF
Subjt:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPPNH
        VETPNMSEI WVPDT DSKKYVKESVLSPYSRIFPPN+
Subjt:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPPNH

A0A6J1HAL0 SOSS complex subunit B homolog1.1e-6488.97Show/hide
Query:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF
        MISLK+LVPAAQNNVN +FIV+EKG TT+EGQNK CQ+LV D+TAAVHFQLWG+ECDVVEPSDI+RLTNGIFSY+RN+NLVLRAGKRGKIEKVGEFNMVF
Subjt:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVPDTT+SKKYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

A0A6J1HZ66 SOSS complex subunit B homolog2.0e-6386.76Show/hide
Query:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF
        MISLK+LVPAAQNNVN +FIV+EKG TT++GQNK CQ+LV D+TAAVHFQLWG+ECDVVEPSDI+RL NGIFSY+RNNNLVLRAGKRGKIEKVGEFNMVF
Subjt:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVPDT++SKKYVKESV+SPYSRIFPP
Subjt:  VETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

SwissProt top hitse value%identityAlignment
A6QLK2 SOSS complex subunit B11.2e-1238.68Show/hide
Query:  LKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTL-VGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVE
        +K++ P  + N+N  FIV+E G+ T        +T  V DKT +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTL-VGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE

Q54X41 SOSS complex subunit B homolog1.3e-1435.77Show/hide
Query:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF
        +I + E+ P ++ N+N  FIV++KG  T + +    Q LV D TA+++  +W    + ++P DI+RL  G +S      L L  GK G IEK+GEF   F
Subjt:  MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHW--VPDTTDSKKYVKESVLSPYSRIFP
        VE PN+S   W    D  + K  V     SP+ +  P
Subjt:  VETPNMSEIHW--VPDTTDSKKYVKESVLSPYSRIFP

Q8R2Y9 SOSS complex subunit B11.2e-1238.68Show/hide
Query:  LKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTL-VGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVE
        +K++ P  + N+N  FIV+E G+ T        +T  V DKT +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTL-VGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE

Q9BQ15 SOSS complex subunit B11.2e-1238.68Show/hide
Query:  LKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTL-VGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVE
        +K++ P  + N+N  FIV+E G+ T        +T  V DKT +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTL-VGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE

Q9VM17 SOSS complex subunit B homolog4.8e-1439.81Show/hide
Query:  ISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTL-VGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF
        I +K++ P  + N+N  FIV+E G  T+  +N+  +   VGD TA ++  +W +   ++ P DI+RLT G  S  R + L L +GK G++ K+GE+ MVF
Subjt:  ISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTL-VGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSE
         E+ NMSE
Subjt:  VETPNMSE

Arabidopsis top hitse value%identityAlignment
AT5G63690.1 Nucleic acid-binding, OB-fold-like protein3.7e-4659.4Show/hide
Query:  LKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVET
        LK++VPAAQNN++  FI+++K K++       C  L  D+TAAVH QLWGDECD  E  DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + FVET
Subjt:  LKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVET

Query:  PNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        PN+SEI W+PD  + K+Y++  V+S YSRIFPP
Subjt:  PNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATCTCTGAAGGAGTTGGTGCCAGCAGCCCAGAACAATGTGAATGCAGAATTCATAGTTGTGGAGAAAGGGAAGACAACAATAGAAGGACAAAACAAGGCATGTCA
AACACTGGTGGGCGACAAAACAGCAGCGGTTCACTTCCAGCTATGGGGAGACGAGTGCGATGTGGTCGAGCCGAGCGACATCATACGGTTGACGAATGGGATATTCTCCT
ACACACGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAAATAGAAAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCAT
TGGGTTCCCGACACCACCGACTCCAAGAAGTATGTCAAGGAATCTGTTCTATCTCCCTATTCTCGCATCTTTCCGCCAAACCATTGA
mRNA sequenceShow/hide mRNA sequence
TTTGGTTTCAAAAGTGATTTTAAAATTAATAAATTACTAAAAAAGACATTTTTTATTTAATATATTAAGTAAGAAAATACGTACAATAAATATCAAAATAAAAATAAAAA
TCTCATTTACTCTGTAAATGCTTGTATCATTACAAATCAGTAAATGCTCGTATCATTAAAATCTCATTTACTCTACAAATTGATGCAACAACAATTTTCACTTGTTTTTC
AAAAGGAAAACGATGCATATAATGTACCATTCACCATCTATTTTTTCAAACACCAAATGTCCTCTCAATTGGCTTTATCCATAATTTCTTCCCGTCTTTTCACTAATCTA
ACTATCACTCCCAAACATGTCCTAAATTTCAAATTTGAAAAGTTAAAATGAAACTTTTCATAGTTTAGGAGGGAGAGAGGAAGGAAATAGTGGGGGAGAGAAAGAAGAAA
CGAAAAAATTGAGTGAAAGAGCGAGAGAGAGAGAGAAAGGACAGATCAGAGAGATCTCTCCTGCCGTCGGAACTTCTCATCTTTCGCCGGAAAACTGTGACCGTTCGCCC
AAAGTATCCCACCAGTCGGTAAAGTTTCTATTTTTCTCTCTCTCTCTCTCTCTTTTTTTATGTGTTTTATGTTACTGTCATTTTGACACAGTTCTGGGCTTCGAATCATA
GAGTTCGATTTCCATCTTTCTTATACCATGAACCTTAGTTTCCTTCTCTGAAAACTACTGATTTTCATTTGCTTTGGGGAAAAAATCTATCGAAGGAATTAGCTTCTACA
GATGGCCATATGTGAAGCATCCTCTACCTATTCGTAGAAATGACTGAATGAAGTTTTAGAACATATGATGTCTGTTACCTTTAGTTTTAGTCTATGTTTAATATTATCAT
TATTCAAATTGCATTTTTTAACTTTTAGATTATACCTTTTTTAGGAAAAATATGAATGTATACTATGAACTTGACACAATATATCAATCTAAAGTACACCCTTAGATAAG
TATTGTAATATTTACCTCAAACTTGAAAAATGATTGCAGTTTTTCATTTTCTTTCGTGTGATAAGTTTTCATTGAAAGAATGGTTAAAAAGTATTGTTATGTGCCTACCA
TGAATCATAAAACATGTGTATGGTACGAGATTGACTTGATTTTGTGGATTGATCAAACTTAATTTCGTACAGATTGTGCTTGAGTGGAGTGGATTGAATCGAATATTGTA
AGGTTGTTTGTTTGTGGGAGTTTAAAAAGTAGATAAATAATGATATCTCTGAAGGAGTTGGTGCCAGCAGCCCAGAACAATGTGAATGCAGAATTCATAGTTGTGGAGAA
AGGGAAGACAACAATAGAAGGACAAAACAAGGCATGTCAAACACTGGTGGGCGACAAAACAGCAGCGGTTCACTTCCAGCTATGGGGAGACGAGTGCGATGTGGTCGAGC
CGAGCGACATCATACGGTTGACGAATGGGATATTCTCCTACACACGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAAATAGAAAAGGTGGGAGAGTTCAAC
ATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACCACCGACTCCAAGAAGTATGTCAAGGAATCTGTTCTATCTCCCTATTCTCGCATCTT
TCCGCCAAACCATTGATATGGTTGTGGTTGTGGTTGTGATTGTGGACTCAATTTGAGTGAATGTGTTTTTCAACTAATGCAAATAAAAGAGCAGGATTTTGAAGATGCAA
TGGAAATGATGTATACTGTATTGAGCAAAACAAGAGGGATAAACACACAAATCTTTTGTGGTCCACAATAATCAAACAGACATCAACCCAATTTTTTACTACATATTTGA
AAGCCACGTAGTTCTAGC
Protein sequenceShow/hide protein sequence
MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIH
WVPDTTDSKKYVKESVLSPYSRIFPPNH