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Tan0005026 (gene) of Snake gourd v1 genome

Gene IDTan0005026
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptioncytochrome c6, chloroplastic
Genome locationLG03:81694532..81697021
RNA-Seq ExpressionTan0005026
SyntenyTan0005026
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0005506 - iron ion binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR009056 - Cytochrome c-like domain
IPR023655 - Cytochrome c6
IPR036909 - Cytochrome c-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439440.1 PREDICTED: cytochrome c6, chloroplastic [Cucumis melo]4.5e-7280.12Show/hide
Query:  MHLLSVIS------PTPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGA
        M LLSV S       +PH FP+ G RR  VC +R  VKIL+TLAPPLIA+L+ LSPLN  KTPGC  LA+TTEIERGGALF+Q+CIGCHDGGGNIIQPGA
Subjt:  MHLLSVIS------PTPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGA

Query:  TLFSSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP
        TLFSSDLERNGADAEEEI++ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK+QADRGWPNP
Subjt:  TLFSSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP

XP_022926876.1 cytochrome c6, chloroplastic [Cucurbita moschata]4.3e-7585.12Show/hide
Query:  MHLLSVISP---TPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLF
        M  LSV S    +PHCFP+K QRR AVC MRRQVKILKTLAPPLIAVLIAL PLN  KTPGC ALAQ+ EIERGGALFS +CIGCHD GGNIIQPGATLF
Subjt:  MHLLSVISP---TPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLF

Query:  SSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP
        SSDLERNGAD+EEEI+QITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK+QADRGWPNP
Subjt:  SSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP

XP_023003546.1 cytochrome c6, chloroplastic [Cucurbita maxima]2.8e-7484.52Show/hide
Query:  MHLLSVISP---TPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLF
        M LLSVIS    +PHCF +K QRR  VC MRRQVK LK LAPPLIAVLIAL PLN  KTPGC ALAQ+ EIERGGALFS +CIGCHDGGGNIIQPGATLF
Subjt:  MHLLSVISP---TPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLF

Query:  SSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP
        SSDLERNGAD+EEEI+QITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK+QADRGWPNP
Subjt:  SSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP

XP_023517564.1 cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo]2.1e-7484.52Show/hide
Query:  MHLLSVISP---TPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLF
        M  LSV S    +PHCFP+K QRR AVC MRRQV ILKTLAPPLIAVLIAL PLN  KTPGC ALAQ+ EIERGGALFS +CIGCHD GGNIIQPGATLF
Subjt:  MHLLSVISP---TPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLF

Query:  SSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP
        SSDLERNGAD+EEEI+QITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK+QADRGWPNP
Subjt:  SSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP

XP_038877732.1 cytochrome c6, chloroplastic [Benincasa hispida]1.5e-7583.93Show/hide
Query:  MHLLSVIS---PTPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLF
        MHLLS  S   PTPHCFP+K +RR  VC +R QVKIL +LAPPLIAV +ALSPLN  +TPGC ALAQT EIERGGALF+Q+CIGCHDGGGNIIQPGATLF
Subjt:  MHLLSVIS---PTPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLF

Query:  SSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP
        SSDLERNGADAEEEI++ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK+QADRGWPNP
Subjt:  SSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP

TrEMBL top hitse value%identityAlignment
A0A0A0KPD1 Cytochrome c domain-containing protein2.3e-6678.79Show/hide
Query:  MHLLSVISPTPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSD
        MHLLS            G+RR  VC +R QVKILK L PPLIA+L+ LSPLN  KT GC  LA+T EIERGGALF+QSCIGCHDGGGNIIQPGATLFSSD
Subjt:  MHLLSVISPTPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSD

Query:  LERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP
        LERNGADAEEEI++ITY GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK+QADRGWPNP
Subjt:  LERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP

A0A1S3AYD3 cytochrome c6, chloroplastic2.2e-7280.12Show/hide
Query:  MHLLSVIS------PTPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGA
        M LLSV S       +PH FP+ G RR  VC +R  VKIL+TLAPPLIA+L+ LSPLN  KTPGC  LA+TTEIERGGALF+Q+CIGCHDGGGNIIQPGA
Subjt:  MHLLSVIS------PTPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGA

Query:  TLFSSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP
        TLFSSDLERNGADAEEEI++ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK+QADRGWPNP
Subjt:  TLFSSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP

A0A6J1CXZ2 cytochrome c6, chloroplastic3.8e-6980.47Show/hide
Query:  MHLLSVISP---TPHCFPVKGQRRAAVCPMR-RQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATL
        MHLLS IS      HCF +KG+R  AVC  R +Q+KI K+ APPLIAVLIALSP+   KTPGC  LAQT EIERGGALFSQSCIGCHDGGGNIIQPGATL
Subjt:  MHLLSVISP---TPHCFPVKGQRRAAVCPMR-RQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATL

Query:  FSSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP
        FSSDLERNGAD EEEI+ ITYYGKGRMPGFGENCKPRGQCTFGPRLQE+EIRLLAKFVK+QADRGW NP
Subjt:  FSSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP

A0A6J1EG38 cytochrome c6, chloroplastic2.1e-7585.12Show/hide
Query:  MHLLSVISP---TPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLF
        M  LSV S    +PHCFP+K QRR AVC MRRQVKILKTLAPPLIAVLIAL PLN  KTPGC ALAQ+ EIERGGALFS +CIGCHD GGNIIQPGATLF
Subjt:  MHLLSVISP---TPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLF

Query:  SSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP
        SSDLERNGAD+EEEI+QITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK+QADRGWPNP
Subjt:  SSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP

A0A6J1KPJ4 cytochrome c6, chloroplastic1.4e-7484.52Show/hide
Query:  MHLLSVISP---TPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLF
        M LLSVIS    +PHCF +K QRR  VC MRRQVK LK LAPPLIAVLIAL PLN  KTPGC ALAQ+ EIERGGALFS +CIGCHDGGGNIIQPGATLF
Subjt:  MHLLSVISP---TPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLF

Query:  SSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP
        SSDLERNGAD+EEEI+QITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK+QADRGWPNP
Subjt:  SSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP

SwissProt top hitse value%identityAlignment
P00110 Cytochrome c63.9e-1035.42Show/hide
Query:  EIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGW
        +IE G  +F+ +C  CH GG N+I P  TL    LE NG +A   I      GK  MP             FG RL + +I  +A +V  Q+++GW
Subjt:  EIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGW

P07497 Cytochrome c66.0e-1130.53Show/hide
Query:  KILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIFQITYYGKGRMPGFGENCK
        +IL T    L+ +L  ++P            AQ  ++  GG +FS +C  CH GG N++ P  TL  +DL++ G  + E I      GKG MP FG    
Subjt:  KILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIFQITYYGKGRMPGFGENCK

Query:  PRGQCTFGPRLQEEEIRLLAKFVKMQADRGW
                 +L  ++I  +A +V  Q+++GW
Subjt:  PRGQCTFGPRLQEEEIRLLAKFVKMQADRGW

P0A3X9 Cytochrome c68.6e-1031.4Show/hide
Query:  IAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPR
        IA+L++L+P            A   ++  G  +FS +C  CH GGGN++    TL    LE+ G  +E+ I     +GK  MP             F  R
Subjt:  IAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIFQITYYGKGRMPGFGENCKPRGQCTFGPR

Query:  LQEEEIRLLAKFVKMQADRGW
        L +E+I+ +A +V  QA +GW
Subjt:  LQEEEIRLLAKFVKMQADRGW

P25935 Cytochrome c66.0e-1130.53Show/hide
Query:  KILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIFQITYYGKGRMPGFGENCK
        +IL T    L+ +L  ++P            AQ  ++  GG +FS +C  CH GG N++ P  TL  +DL++ G  + E I      GKG MP FG    
Subjt:  KILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIFQITYYGKGRMPGFGENCK

Query:  PRGQCTFGPRLQEEEIRLLAKFVKMQADRGW
                 +L  ++I  +A +V  Q+++GW
Subjt:  PRGQCTFGPRLQEEEIRLLAKFVKMQADRGW

Q93VA3 Cytochrome c6, chloroplastic4.2e-4967.91Show/hide
Query:  ILKTLAPPLIAVLIALSPLNNYKTPGC---PALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIFQITYYGKGRMPGFGEN
        +LK LAPPL AVL+A+SP+       C    +L QT +I+RG  LF+++CIGCHD GGNIIQPGATLF+ DLERNG D EEEI+++TY+GKGRMPGFGE 
Subjt:  ILKTLAPPLIAVLIALSPLNNYKTPGC---PALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIFQITYYGKGRMPGFGEN

Query:  CKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWP
        C PRGQCTFGPRLQ+EEI+LLA+FVK QAD+GWP
Subjt:  CKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWP

Arabidopsis top hitse value%identityAlignment
AT5G45040.1 Cytochrome c3.0e-5067.91Show/hide
Query:  ILKTLAPPLIAVLIALSPLNNYKTPGC---PALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIFQITYYGKGRMPGFGEN
        +LK LAPPL AVL+A+SP+       C    +L QT +I+RG  LF+++CIGCHD GGNIIQPGATLF+ DLERNG D EEEI+++TY+GKGRMPGFGE 
Subjt:  ILKTLAPPLIAVLIALSPLNNYKTPGC---PALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIFQITYYGKGRMPGFGEN

Query:  CKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWP
        C PRGQCTFGPRLQ+EEI+LLA+FVK QAD+GWP
Subjt:  CKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCTTCTCTCCGTAATTAGCCCTACTCCCCATTGCTTTCCAGTAAAGGGACAACGACGAGCCGCAGTTTGTCCAATGCGTAGACAAGTTAAGATTCTCAAGACCTT
GGCCCCCCCTCTGATTGCTGTGCTTATAGCATTATCTCCTCTCAACAATTACAAAACCCCAGGATGTCCTGCGCTTGCTCAAACGACAGAAATAGAAAGAGGAGGCGCAT
TGTTCAGTCAATCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATCCAGCCCGGTGCAACGCTCTTTTCAAGCGATCTTGAAAGAAATGGAGCTGATGCCGAAGAG
GAGATCTTCCAAATTACATATTACGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAGGAAGAGAT
TAGGCTTTTGGCGAAGTTTGTAAAGATGCAGGCAGATCGGGGGTGGCCAAACCCATAG
mRNA sequenceShow/hide mRNA sequence
GGACGGCCTAGTTTCAAGTTTCGGTGAAGGCGAGGCGAGGTGGTAGACACATCAAAAAGCTAAAAGCCGCCAAAGCGCAGGAGCAACGGCGAGACCGCCCGCGTCAGAGA
CGAAAGAGATGCATCTTCTCTCCGTAATTAGCCCTACTCCCCATTGCTTTCCAGTAAAGGGACAACGACGAGCCGCAGTTTGTCCAATGCGTAGACAAGTTAAGATTCTC
AAGACCTTGGCCCCCCCTCTGATTGCTGTGCTTATAGCATTATCTCCTCTCAACAATTACAAAACCCCAGGATGTCCTGCGCTTGCTCAAACGACAGAAATAGAAAGAGG
AGGCGCATTGTTCAGTCAATCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATCCAGCCCGGTGCAACGCTCTTTTCAAGCGATCTTGAAAGAAATGGAGCTGATG
CCGAAGAGGAGATCTTCCAAATTACATATTACGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAG
GAAGAGATTAGGCTTTTGGCGAAGTTTGTAAAGATGCAGGCAGATCGGGGGTGGCCAAACCCATAGATGGTGATTGATTTTGGGGCCAGAATATAATGCCGTGGTTCCCA
ATTACTAACTTATGTTAGTTTACTTTGTATAAAGTTGAAGTCTCACCTGTCGATATTTCCCAAATTCTTATCTGAATCAATGGCCTTTCATACGATACATGTGGTTCATC
TCTAGCTAATATGGCCATAGAATGGACTGTTGATAGTATCCTGTTGATAAATAGCTAGCAACGTTCAAACATTGTAAGCATATGTGTTTCTAATGTGCGATGCACATGAA
ATGATACCAAAAAATGAACGTGAAACTAACAACTCAAATTCAAATGTTCCGATGACTCTATATGTGCCAATTTGAACAATAAAAAATCATATTGATGCAACTTTCAATTG
TTCTTAATCAATATTCTCTTTCGGGTATTTGATGGATTGATTTCTGGAGAACTTAGTTGAACGAGGAACATTGGAATTCATAAAGAT
Protein sequenceShow/hide protein sequence
MHLLSVISPTPHCFPVKGQRRAAVCPMRRQVKILKTLAPPLIAVLIALSPLNNYKTPGCPALAQTTEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEE
EIFQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKMQADRGWPNP