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Tan0005034 (gene) of Snake gourd v1 genome

Gene IDTan0005034
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGibberellin-regulated family protein
Genome locationLG06:74131427..74134375
RNA-Seq ExpressionTan0005034
SyntenyTan0005034
Gene Ontology termsGO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF1927966.1 unnamed protein product [Brassica napus]4.4e-2673.91Show/hide
Query:  PPRTGRRTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        PP    +   CPKACD+RCS TSHQKPCLFFCN CC+KCLCVPSGTYG +EECPCYNNWK K+G  KCP
Subjt:  PPRTGRRTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

XP_010414214.1 PREDICTED: gibberellin-regulated protein 12-like [Camelina sativa]3.4e-2680.95Show/hide
Query:  RTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        R   CPKAC+YRCS TSH+KPCLFFCNKCC KCLCVPSGTYG +EECPCY+NWKTKEG  KCP
Subjt:  RTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

XP_013675144.1 gibberellin-regulated protein 12-like [Brassica napus]3.4e-2670.83Show/hide
Query:  VGSPPRTGRRTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        +  PP    +   CPKACD+RCS TSHQKPCLFFCN CC+KCLCVPSGTYG +EECPCYNNWK K+G  KCP
Subjt:  VGSPPRTGRRTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

XP_042486598.1 gibberellin-regulated protein 12-like isoform X1 [Macadamia integrifolia]4.4e-2680.3Show/hide
Query:  GRRTP-NCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        G  TP  CPKACDYRCS TSH+KPCLFFCN CC KCLCVPSGTYG +EECPCYNNWKT+EG  KCP
Subjt:  GRRTP-NCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

XP_042489914.1 gibberellin-regulated protein 12-like [Macadamia integrifolia]3.4e-2680.95Show/hide
Query:  RTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        R  +CPKAC YRCS TSH+KPCLF+CNKCC+KCLCVPSGTYG +EECPCYNNWKTKEG  KCP
Subjt:  RTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

TrEMBL top hitse value%identityAlignment
A0A078FQS6 BnaC05g19250D protein2.1e-2673.91Show/hide
Query:  PPRTGRRTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        PP    +   CPKACD+RCS TSHQKPCLFFCN CC+KCLCVPSGTYG +EECPCYNNWK K+G  KCP
Subjt:  PPRTGRRTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

A0A540LLF0 Uncharacterized protein3.7e-2679.37Show/hide
Query:  RTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        R+ +CP+AC YRCSTTSH+KPC+FFC KCC KCLCVPSGTYG +EECPCYNNWKTKEG  KCP
Subjt:  RTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

A0A654EZ26 Uncharacterized protein4.8e-2684.75Show/hide
Query:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        CPKAC+YRCS TSH+KPCLFFCNKCC KCLCVPSGTYG +EECPCYNNW TKEG  KCP
Subjt:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

A0A6P6GCN5 gibberellin-regulated protein 12-like6.2e-2656.36Show/hide
Query:  LPIAAFFLALALAFLRLNALGYNGVNYNNLWNAKNICGVGSPPRTGRRTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNW
        L ++AFFL  ALAF        +G +     +  N    G       R  +C KAC+ RCS TSH+KPCLFFCNKCC KCLCVPSGTYG +EECPCYNNW
Subjt:  LPIAAFFLALALAFLRLNALGYNGVNYNNLWNAKNICGVGSPPRTGRRTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNW

Query:  KTKEGAYKCP
        KTKEG  KCP
Subjt:  KTKEGAYKCP

R0FZP7 Uncharacterized protein4.8e-2680.95Show/hide
Query:  RTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        R   CPKAC YRCS TSH+KPCLFFCNKCC+KCLCVPSGTYG +EECPCYNNW TKEG  KCP
Subjt:  RTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

SwissProt top hitse value%identityAlignment
A8MR46 Gibberellin-regulated protein 135.3e-2269.49Show/hide
Query:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        C   C  RCS T ++KPCLFFCNKCC KCLCVP GTYG ++ CPCYNNWKTK G  KCP
Subjt:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

P27057 Protein GAST12.8e-2366.67Show/hide
Query:  GRRTP-NCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        GR  P +C   C YRCS TS++KPC+FFC KCC KCLCVP+GTYG ++ CPCYNNWKTK G  KCP
Subjt:  GRRTP-NCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

P47926 Protein RSI-16.2e-2365.08Show/hide
Query:  RTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        R  +C   C YRCS TSH+KPC+FFC KCC  CLCVP G YG ++ CPCYNNWKT+EG  KCP
Subjt:  RTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

Q6GKX7 Gibberellin-regulated protein 121.3e-2884.75Show/hide
Query:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        CPKAC+YRCS TSH+KPCLFFCNKCC KCLCVPSGTYG +EECPCYNNW TKEG  KCP
Subjt:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

Q84J95 Gibberellin-regulated protein 54.8e-2369.49Show/hide
Query:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        C   C +RCS TSH+KPC+FFC KCC+KCLCVP GT+G ++ CPCYNNWKTKEG  KCP
Subjt:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

Arabidopsis top hitse value%identityAlignment
AT2G30810.1 Gibberellin-regulated family protein9.2e-3084.75Show/hide
Query:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        CPKAC+YRCS TSH+KPCLFFCNKCC KCLCVPSGTYG +EECPCYNNW TKEG  KCP
Subjt:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

AT3G02885.1 GAST1 protein homolog 53.4e-2469.49Show/hide
Query:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        C   C +RCS TSH+KPC+FFC KCC+KCLCVP GT+G ++ CPCYNNWKTKEG  KCP
Subjt:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

AT3G10185.1 Gibberellin-regulated family protein3.7e-2369.49Show/hide
Query:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        C   C  RCS T ++KPCLFFCNKCC KCLCVP GTYG ++ CPCYNNWKTK G  KCP
Subjt:  CPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP

AT5G15230.1 GAST1 protein homolog 44.1e-2246.55Show/hide
Query:  MAKHFSLPIAAFFLALALAFLRLNALGYNGVNYNNLWNAKNICGVGSPPRTGRRTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREEC
        MAK +    A F L L + F+ L  +       N  W+ K   G GS  RT      CP  CD RC  T + K C+ FCNKCC+KCLCVP G YG ++ C
Subjt:  MAKHFSLPIAAFFLALALAFLRLNALGYNGVNYNNLWNAKNICGVGSPPRTGRRTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREEC

Query:  PCYNNWKTKEGAYKCP
         CYNNWKT+EG  KCP
Subjt:  PCYNNWKTKEGAYKCP

AT5G15230.2 GAST1 protein homolog 47.1e-2254.22Show/hide
Query:  NNLWNAKNICGVGSPPRTGRRTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP
        N  W+ K   G GS  RT      CP  CD RC  T + K C+ FCNKCC+KCLCVP G YG ++ C CYNNWKT+EG  KCP
Subjt:  NNLWNAKNICGVGSPPRTGRRTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKEGAYKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGCACTTTTCTCTTCCAATAGCTGCCTTCTTTCTTGCTCTTGCTTTGGCATTCCTTAGATTGAATGCGTTAGGTTATAATGGTGTGAATTATAATAATTTGTG
GAATGCCAAAAATATTTGTGGGGTCGGGTCTCCACCCCGAACAGGGCGAAGAACCCCCAATTGTCCAAAAGCATGTGATTATCGATGTTCAACGACGTCGCATCAGAAGC
CATGTTTGTTTTTCTGCAACAAATGCTGCCAGAAATGTCTATGCGTTCCATCGGGTACTTACGGCCGTAGAGAAGAATGCCCCTGTTACAATAATTGGAAGACCAAGGAG
GGCGCCTATAAATGCCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGCACTTTTCTCTTCCAATAGCTGCCTTCTTTCTTGCTCTTGCTTTGGCATTCCTTAGATTGAATGCGTTAGGTTATAATGGTGTGAATTATAATAATTTGTG
GAATGCCAAAAATATTTGTGGGGTCGGGTCTCCACCCCGAACAGGGCGAAGAACCCCCAATTGTCCAAAAGCATGTGATTATCGATGTTCAACGACGTCGCATCAGAAGC
CATGTTTGTTTTTCTGCAACAAATGCTGCCAGAAATGTCTATGCGTTCCATCGGGTACTTACGGCCGTAGAGAAGAATGCCCCTGTTACAATAATTGGAAGACCAAGGAG
GGCGCCTATAAATGCCCCTGA
Protein sequenceShow/hide protein sequence
MAKHFSLPIAAFFLALALAFLRLNALGYNGVNYNNLWNAKNICGVGSPPRTGRRTPNCPKACDYRCSTTSHQKPCLFFCNKCCQKCLCVPSGTYGRREECPCYNNWKTKE
GAYKCP