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Tan0005084 (gene) of Snake gourd v1 genome

Gene IDTan0005084
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionarabinogalactan peptide 13-like
Genome locationLG09:62053104..62053793
RNA-Seq ExpressionTan0005084
SyntenyTan0005084
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
InterPro domainsIPR039281 - Arabinogalactan protein 3/12/13/14/21


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022018.1 Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]9.2e-1281.36Show/hide
Query:  MEAMKFQVLMVTMVVAVMAFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLFL
        M AMKF+ LMV MVVAVMAFSSSIVAAQ+APAPSP+SDA +SLPTLMASLAPL L  FL
Subjt:  MEAMKFQVLMVTMVVAVMAFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLFL

KAG7023913.1 Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-1281.36Show/hide
Query:  MEAMKFQVLMVTMVVAVMAFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLFL
        MEAMKFQ LM+ MVV  MA SS+IVAAQ+APAPSP+SDAS+SLPTLMASLAPLALG FL
Subjt:  MEAMKFQVLMVTMVVAVMAFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLFL

XP_011660059.1 arabinogalactan protein 13 [Cucumis sativus]4.4e-0664.41Show/hide
Query:  AMKFQVLMVTMVVAVM---AFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLF
        A +FQ LMVTM+V V+   + SS+IVAAQ+APAPSP+SDAS+S+PTLMAS  PL  G F
Subjt:  AMKFQVLMVTMVVAVM---AFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLF

XP_022988237.1 arabinogalactan peptide 13-like [Cucurbita maxima]7.0e-1279.66Show/hide
Query:  MEAMKFQVLMVTMVVAVMAFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLFL
        MEAMKFQ LM+ MVV  MA SS+IVAAQ+APAPSP+SDA +SLPTLMASLAPLALG FL
Subjt:  MEAMKFQVLMVTMVVAVMAFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLFL

XP_038879727.1 arabinogalactan protein 13-like [Benincasa hispida]5.6e-0978.69Show/hide
Query:  MEAMKFQVL-MVTMVVAVMAF-SSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLFL
        MEAMK Q L M+ MVV +MAF SSSIVAAQ+APAPSP+SDA ISLPTLMASLAPL LG FL
Subjt:  MEAMKFQVL-MVTMVVAVMAF-SSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLFL

TrEMBL top hitse value%identityAlignment
A0A0A0LWU9 Uncharacterized protein2.1e-0664.41Show/hide
Query:  AMKFQVLMVTMVVAVM---AFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLF
        A +FQ LMVTM+V V+   + SS+IVAAQ+APAPSP+SDAS+S+PTLMAS  PL  G F
Subjt:  AMKFQVLMVTMVVAVM---AFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLF

A0A6J1JCI6 arabinogalactan peptide 13-like3.4e-1279.66Show/hide
Query:  MEAMKFQVLMVTMVVAVMAFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLFL
        MEAMKFQ LM+ MVV  MA SS+IVAAQ+APAPSP+SDA +SLPTLMASLAPLALG FL
Subjt:  MEAMKFQVLMVTMVVAVMAFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLFL

SwissProt top hitse value%identityAlignment
Q9C8A4 Arabinogalactan protein 212.5e-0453.57Show/hide
Query:  MEAMKFQVLMVTMVVAVMAFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALG
        MEAMK ++++  MVVAV AFS++  A  +APAPSP+SDA++ +P L AS+  LA G
Subjt:  MEAMKFQVLMVTMVVAVMAFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALG

Q9LVC0 Arabinogalactan protein 141.9e-0456.67Show/hide
Query:  MEAMKFQVLMVTMVVAVMAFSS--SIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLF
        MEAMK + L V ++VAV+AFS+    VAA  APAPSP+SDAS  +PT  AS+A +A G F
Subjt:  MEAMKFQVLMVTMVVAVMAFSS--SIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLF

Q9STQ3 Arabinogalactan protein 132.5e-0456.14Show/hide
Query:  MEAMKFQVLMVTMVVAVMAFSS-SIVAAQQAPAPSPSSDASISLPTLMASLAPLALG
        MEAMK + L V ++VA MAFS+    AA +APAPSP+SDAS+++P   AS+A LA G
Subjt:  MEAMKFQVLMVTMVVAVMAFSS-SIVAAQQAPAPSPSSDASISLPTLMASLAPLALG

Arabidopsis top hitse value%identityAlignment
AT1G55330.1 arabinogalactan protein 211.8e-0553.57Show/hide
Query:  MEAMKFQVLMVTMVVAVMAFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALG
        MEAMK ++++  MVVAV AFS++  A  +APAPSP+SDA++ +P L AS+  LA G
Subjt:  MEAMKFQVLMVTMVVAVMAFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALG

AT3G13520.1 arabinogalactan protein 128.9e-0550Show/hide
Query:  MEAMKFQVLMVTMVVAVMAFSS--SIVAAQQAPAPSPSSDASISLPTLMASLAPLALG
        ME+MK + L+V ++VA++AFS+  ++ A  +APAPSP+SDA++ +P L AS+A LA G
Subjt:  MEAMKFQVLMVTMVVAVMAFSS--SIVAAQQAPAPSPSSDASISLPTLMASLAPLALG

AT4G26320.1 arabinogalactan protein 131.8e-0556.14Show/hide
Query:  MEAMKFQVLMVTMVVAVMAFSS-SIVAAQQAPAPSPSSDASISLPTLMASLAPLALG
        MEAMK + L V ++VA MAFS+    AA +APAPSP+SDAS+++P   AS+A LA G
Subjt:  MEAMKFQVLMVTMVVAVMAFSS-SIVAAQQAPAPSPSSDASISLPTLMASLAPLALG

AT5G56540.1 arabinogalactan protein 141.4e-0556.67Show/hide
Query:  MEAMKFQVLMVTMVVAVMAFSS--SIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLF
        MEAMK + L V ++VAV+AFS+    VAA  APAPSP+SDAS  +PT  AS+A +A G F
Subjt:  MEAMKFQVLMVTMVVAVMAFSS--SIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCAATGAAGTTTCAAGTTTTGATGGTGACAATGGTGGTGGCTGTTATGGCTTTCTCATCCTCCATTGTTGCAGCTCAACAAGCTCCAGCTCCAAGCCCTTCTTC
TGATGCTTCAATTTCTCTTCCAACTTTAATGGCTTCTCTTGCTCCTCTTGCTCTTGGCCTTTTCCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATAAATGCCAACAAACCCACCATCATTGCTCTTAACAACAACAGGCTCTGTTTGAAGAAAGCAAGAGAAACCCATTTGAAAGCTTTCAAATTTGAGCATAAAACTCAAAG
CTTTAAGCTTTTTGAGTGATTCATCAATGGAAGCAATGAAGTTTCAAGTTTTGATGGTGACAATGGTGGTGGCTGTTATGGCTTTCTCATCCTCCATTGTTGCAGCTCAA
CAAGCTCCAGCTCCAAGCCCTTCTTCTGATGCTTCAATTTCTCTTCCAACTTTAATGGCTTCTCTTGCTCCTCTTGCTCTTGGCCTTTTCCTCTGAATTTCATTTCCTCC
TTTCATCTTCCTTTTAATTTCAGTCACCATTTATTGTAAGTTCTAATGAATATATATATATATATATATATATTTGTGTTCTAAACCCATCTTGTTCATTTTCTCTCGAG
AAATTATGGAATATCCATGAACAAAGGAATTGGAGAGATGGGTTGGTGTTCTTTTTTTTTTTTTTAAGGATTTGTTAGGGGTGATGAATATTGAATTTGTTTGGGTGTGA
TTTTGGATTATTAACTTGATGTATATTTTCAATATTTAATGCATATGTTTTTTCTTTTCTTTTATTGTTATTGCTATGAGGATGTGCAATTTTATAATTATTAATTAATT
CTCTTCATTACCAATATGGGTATAGCTCGA
Protein sequenceShow/hide protein sequence
MEAMKFQVLMVTMVVAVMAFSSSIVAAQQAPAPSPSSDASISLPTLMASLAPLALGLFL